Search results for "distribution:BioPerl-Run Bio::Emboss"
Bio::Factory::EMBOSS - EMBOSS application factory class
The EMBOSS factory class encapsulates access to EMBOSS programs. A factory object allows creation of only known applications. If you want to check command line options before sending them to the program set $prog->verbose to positive integer. The val...
CJFIELDS/BioPerl-Run-1.007003 - 08 Feb 2019 19:55:33 UTC
Bio::Tools::Run::EMBOSSApplication - class for EMBOSS Applications
The EMBOSSApplication class can represent any EMBOSS program. It is created by a Bio::Factory::EMBOSS object. If you want to check command line options before sending them to the program set $prog->verbose to positive integer. The ADC description of ...
CJFIELDS/BioPerl-Run-1.007003 - 08 Feb 2019 19:55:33 UTC
Bio::Tools::Run::EMBOSSacd - class for EMBOSS Application qualifiers
The EMBOSSacd represents all the possible command line arguments that can be given to an EMBOSS application. Do not create this object directly. It will be created and attached to its corresponding Bio::Tools::Run::EMBOSSApplication if you set $appli...
CJFIELDS/BioPerl-Run-1.007003 - 08 Feb 2019 19:55:33 UTC
Bio::Tools::Run::Phylo::LVB - Object for using the LVB program to create an array of Bio::Tree objects from a nucleotide multiple alignment file or a nucleotide SimpleAlign object. Works with LVB version 2.1.
Wrapper for LVB, which uses a simulated annealing heuristic search to seek parsimonious trees from a nucleotide multiple alignment....
CJFIELDS/BioPerl-Run-1.007003 - 08 Feb 2019 19:55:33 UTC
Bio::Tools::Run::Analysis::soap - A SOAP-based access to the analysis tools
This object allows to execute and to control a remote analysis tool (an application, a program) using the SOAP middleware, All its public methods are documented in the interface module "Bio::AnalysisI" and explained in tutorial available in the "anal...
CJFIELDS/BioPerl-Run-1.007003 - 08 Feb 2019 19:55:33 UTC
Bio::Tools::Run::AnalysisFactory::soap - A SOAP-based access to the list of analysis tools
All public methods are documented in the interface module "Bio::Factory::AnalysisI"....
CJFIELDS/BioPerl-Run-1.007003 - 08 Feb 2019 19:55:33 UTC