Search results for "distribution:BioX-Seq VOLKENING"
BioX::Seq - a (very) basic biological sequence object
"BioX::Seq" is a simple sequence class that can be used to represent biological sequences. It was designed as a compromise between using simple strings and hashes to hold sequences and using the rather bloated objects of Bioperl. Features (or, depend...
VOLKENING/BioX-Seq-0.008009 - 08 Jan 2024 17:27:54 UTC
BioX::Seq::Fetch - Fetch records from indexed FASTA non-sequentially
"BioX::Seq::Fetch" provides non-sequential access to records from indexed sequence files. Currently only FASTA files indexed using "samtoools faidx" or another compatible method are supported. The module will now create samtools-compatible index file...
VOLKENING/BioX-Seq-0.008009 - 08 Jan 2024 17:27:54 UTC
BioX::Seq::Utils - miscellaneous sequence-related functions
"BioX::Seq::Utils" contain a number of sequence-related functions. They are general functions that are used often enough to warrant inclusion in a library but not often enough to warrant addition to the core "BioX::Seq" class. They may also include c...
VOLKENING/BioX-Seq-0.008009 - 08 Jan 2024 17:27:54 UTC
BioX::Seq::Stream - Parse FASTA and FASTQ files sequentially
"BioX::Seq::Stream" is a sequential parser for FASTA and FASTQ files. It should handle any valid input, with the exception of the use of semi-colons to indicate FASTA comments (this could be easily implemented, but I have never seen an actual FASTA f...
VOLKENING/BioX-Seq-0.008009 - 08 Jan 2024 17:27:54 UTC
BioX::Seq::Stream::FASTQ - the FASTQ parser for BioX::Seq:Stream;
This module performs robust parsing of FASTQ sequence streams. It is not intended to be used directly but is called by "BioX::Seq::Stream" after file format autodetection. Please see the documentation for that module for more details....
VOLKENING/BioX-Seq-0.008009 - 08 Jan 2024 17:27:54 UTC
BioX::Seq::Stream::FASTA - the FASTA parser for BioX::Seq:Stream;
This module performs robust parsing of FASTA sequence streams. It is not intended to be used directly but is called by "BioX::Seq::Stream" after file format autodetection. Please see the documentation for that module for more details....
VOLKENING/BioX-Seq-0.008009 - 08 Jan 2024 17:27:54 UTC
BioX::Seq::Stream::TwoBit - the TwoBit parser for BioX::Seq:Stream;
This module performs parsing of TwoBit sequence streams. It is not intended to be used directly but is called by "BioX::Seq::Stream" after file format autodetection. Please see the documentation for that module for more details. NOTE: This module is ...
VOLKENING/BioX-Seq-0.008009 - 08 Jan 2024 17:27:54 UTC