Search results for "distribution:FAST Bio::Map::Position"
FAST::Bio::Seq::QualI - Interface definition for a FAST::Bio::Seq::Qual
This object defines an abstract interface to basic quality information. PrimaryQual is an object just for the quality and its name(s), nothing more. There is a pure perl implementation of this in FAST::Bio::Seq::PrimaryQual. If you just want to use F...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC
FAST::Bio::Seq - Sequence object, with features
A Seq object is a sequence with sequence features placed on it. The Seq object contains a PrimarySeq object for the actual sequence and also implements its interface. In Bioperl we have 3 main players that people are going to use frequently FAST::Bio...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC
FAST::Bio::Seq::Meta - Generic superclass for sequence objects with residue-based meta information
This class implements generic methods for sequences with residue-based meta information. Meta sequences with meta data are FAST::Bio::LocatableSeq objects with additional methods to store that meta information. See FAST::Bio::LocatableSeq and FAST::B...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC
FAST::Bio::PrimarySeq - Bioperl lightweight Sequence Object
PrimarySeq is a lightweight Sequence object, storing the sequence, its name, a computer-useful unique name, and other fundamental attributes. It does not contain sequence features or other information. To have a sequence with sequence features you sh...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC
FAST::Bio::SimpleAlign - Multiple alignments held as a set of sequences
SimpleAlign is an object that handles a multiple sequence alignment (MSA). It is very permissive of types (it does not insist on sequences being all same length, for example). Think of it as a set of sequences with a whole series of built-in manipula...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC
FAST::Bio::SeqIO::table - sequence input/output stream from a delimited table
This class transforms records in a table-formatted text file into FAST::Bio::Seq objects. A table-formatted text file of sequence records for the purposes of this module is defined as a text file with each row corresponding to a sequence, and the att...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC
FAST::Bio::Align::AlignI - An interface for describing sequence alignments.
This interface describes the basis for alignment objects....
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC
FAST::Bio::Seq::PrimaryQual - Bioperl lightweight Quality Object
This module provides a mechanism for storing quality values. Much more useful as part of FAST::Bio::Seq::SeqWithQuality where these quality values are associated with the sequence information....
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC
FAST::Bio::Seq::SequenceTrace - Bioperl object packaging a sequence with its trace
This object stores a sequence with its trace....
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC