Search results for "distribution:FAST taxonomy"
FAST::Bio::DB::Taxonomy - Access to a taxonomy database
This is a front end module for access to a taxonomy database....
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC
FAST::Bio::DB::Taxonomy::list - An implementation of FAST::Bio::DB::Taxonomy that accepts lists of words to build a database
This is an implementation which uses supplied lists of words to create a database from which you can extract FAST::Bio::Taxon objects....
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC
FAST::Bio::DB::Taxonomy::entrez - Taxonomy Entrez driver
A driver for querying NCBI Entrez Taxonomy database....
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC
FAST::Bio::DB::Taxonomy::flatfile - An implementation of FAST::Bio::DB::Taxonomy which uses local flat files
This is an implementation which uses local flat files and the DB_File module RECNO data structures to manage a local copy of the NCBI Taxonomy database. Required database files can be obtained from ftp://ftp.ncbi.nih.gov/pub/taxonomy/taxdump.tar.gz...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC
FAST::Bio::Taxon - A node in a represented taxonomy
This is the next generation (for Bioperl) of representing Taxonomy information. Previously all information was managed by a single object called FAST::Bio::Species. This new implementation allows representation of the intermediate nodes not just the ...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC
fastaxsort - sort sequence records based on NCBI taxonomy
fastaxsort takes NCBI Taxonomy data and multifasta format sequence or alignment data as input and, if directed to valid NCBI Taxonomic names or IDs in the sequence records, outputs those records sorted taxonomically, or more specifically, sorted by p...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC
fastax - select sequence records by NCBI taxonomic names or IDs
fastax takes NCBI Taxonomy data and sequence or alignment data on input and, if directed to valid NCBI Taxonomic ID labels in the sequence records, outputs sequence records that belong to a taxonomic clade as specified by a query argument. For exampl...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC
FAST::Bio::Tools::CodonTable - Codon table object
Codon tables are also called translation tables or genetic codes since that is what they represent. A bit more complete picture of the full complexity of codon usage in various taxonomic groups is presented at the NCBI Genetic Codes Home page. CodonT...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC