Search results for "distribution:GBrowse Bio::Align"
Bio::Graphics::Browser::CAlign - Compiled helper for Bio::Graphics::Browser::Realign
This module is used internally by Bio::Graphics::Browser::Realign. If the module is present, the Smith-Waterman alignment will be faster. Otherwise, Bio::Graphics::Browser::Realign will fall back to a slower pure-perl implementation....
LDS/GBrowse-2.56 - 15 Jan 2017 21:29:11 UTC
Bio::Graphics::Browser2::CAlign - Compiled helper for Bio::Graphics::Browser::Realign
This module is used internally by Bio::Graphics::Browser2::Realign. If the module is present, the Smith-Waterman alignment will be faster. Otherwise, Bio::Graphics::Browser2::Realign will fall back to a slower pure-perl implementation....
LDS/GBrowse-2.56 - 15 Jan 2017 21:29:11 UTC
Bio::Graphics::Browser2::Plugin::AlignTwoSequences - a plugin that executes NCBI's bl2seq on the current view
This Gbrowse plugin will take a sequence (entered in the configuration screen) and BLAST it against the current display, with hits as new sequence features. You must, of course, have the NCBI Blast suite of programs installed, you must have configure...
LDS/GBrowse-2.56 - 15 Jan 2017 21:29:11 UTC
Bio::Graphics::Browser2::Realign - Perl extension for Smith-Waterman alignments
This is a helper utility used by gbrowse to produce global alignments. It uses slow Smith-Waterman, so is only appropriate for short segments that are mostly aligned already. It can be speeded up significantly by compiling Bio::Graphics::Browser2::CA...
LDS/GBrowse-2.56 - 15 Jan 2017 21:29:11 UTC
Bio::Graphics::Browser2::PadAlignment - Insert pads into a multiple alignment
This is a utility module for pretty-printing the type of alignment that comes out of gbrowse, namely a multiple alignment in which each target is aligned to a reference genome without explicit pads or other spaces. For speed and ease of use, the modu...
LDS/GBrowse-2.56 - 15 Jan 2017 21:29:11 UTC