Search results for "distribution:NBI-Slurm PROCH"
NBI::Job - A class for representing a job for NBI::Slurm
The "NBI::Job" module provides a class for representing a job to be submitted to SLURM for High-Performance Computing (HPC). It allows you to define the name of the job, the commands to be executed, and various options related to the job....
PROCH/NBI-Slurm-0.8.2 - 08 Nov 2023 09:45:31 UTC
NBI::Queue - NBI::Queue, to filter jobs in the queue
The "NBI::Queue" module provides a mechanism to filter and manage jobs in the SLURM queue. It allows you to create a queue object and retrieve information about the jobs based on various criteria such as username, job ID, queue name, job state, and j...
PROCH/NBI-Slurm-0.8.2 - 08 Nov 2023 09:45:31 UTC
NBI::Opts - A class for representing a the SLURM options for NBI::Slurm
The "NBI::Opts" module provides a class for representing the SLURM options used by NBI::Slurm for job submission. It allows you to set various options such as the queue, number of threads, allocated memory, execution time, and more....
PROCH/NBI-Slurm-0.8.2 - 08 Nov 2023 09:45:31 UTC
NBI::Slurm - NBI Slurm module
The "NBI::Slurm" package provides a set of classes and methods for submitting jobs to SLURM, a workload manager for high-performance computing (HPC) clusters. It includes the NBI::Job and "NBI::Opts" classes, which allow you to define and configure j...
PROCH/NBI-Slurm-0.8.2 - 08 Nov 2023 09:45:31 UTC
NBI::QueuedJob - NBI::QueuedJob, to describe a job from the SLURM queue (squeue)
The "NBI::QueuedJob" module provides a representation of a job from the SLURM queue (squeue). It allows you to create job objects and access their attributes. It is used by NBI::Queue to describe the jobs in the queue....
PROCH/NBI-Slurm-0.8.2 - 08 Nov 2023 09:45:31 UTC
shelf - Search for HPC packages in the cluster
Scan installed packages in the NBI HPC. The search is case insensitive. Will use a cache file to speed up the search....
PROCH/NBI-Slurm-0.8.2 - 08 Nov 2023 09:45:31 UTC
lsjobs - List your jobs (or others), and delete them if you wish
This script lists the jobs and provides the option to delete them. It allows filtering the jobs based on various criteria such as user, name, and status....
PROCH/NBI-Slurm-0.8.2 - 08 Nov 2023 09:45:31 UTC
runjob - Run a job in the cluster using NBI::Slurm
The "runjob" script allows you to submit a job to the cluster using the NBI::Slurm module. It provides a command-line interface for setting the job parameters, including the queue, memory, threads, and execution time....
PROCH/NBI-Slurm-0.8.2 - 08 Nov 2023 09:45:31 UTC
whojobs - List the users with active jobs, and the number of jobs in the cluster
This script lists the users with jobs and the number of jobs they have in the cluster. It provides options for filtering the output and displaying verbose information....
PROCH/NBI-Slurm-0.8.2 - 08 Nov 2023 09:45:31 UTC
session - Start an interactive session on the cluster
The "session" script allows you to start an interactive session on the cluster with customizable options....
PROCH/NBI-Slurm-0.8.2 - 08 Nov 2023 09:45:31 UTC
waitjobs - Wait for selected jobs to exit the queue
This script waits for selected jobs to exit the queue. It continuously checks the status of the jobs and waits until all the specified jobs are completed....
PROCH/NBI-Slurm-0.8.2 - 08 Nov 2023 09:45:31 UTC
make_package - Install a "package" in the NBI HPC using a singularity image
This script creates a package for running Singularity containers with specified commands. It creates a binary script that sets the necessary environment variables and launches Singularity with the provided container image....
PROCH/NBI-Slurm-0.8.2 - 08 Nov 2023 09:45:31 UTC
configuration_file_info - How to make your configuration file for NBI::Slurm tools
PROCH/NBI-Slurm-0.8.2
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08 Nov 2023 09:45:31 UTC
make_image_from_bioconda - Create a Singularity/Apptainer image from micromamba
Create a Singularity/Apptainer image from a single micromamba package. Multiple packages can be provided, but it's recommended to decide a sensible output name in that case....
PROCH/NBI-Slurm-0.8.2 - 08 Nov 2023 09:45:31 UTC