Search results for "Bio::Annotation::Collection"
Bio::Annotation::Collection - Default Perl implementation of AnnotationCollectionI
Bioperl implementation for Bio::AnnotationCollectionI...
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC - Search in distribution- Bio::AnnotationCollectionI - Interface for annotation collections
- Bio::AnnotationI - Annotation interface
- Bio::Seq - Sequence object, with features
- 29 more results from BioPerl »
FAST::Bio::Annotation::Collection - Default Perl implementation of AnnotationCollectionI
Bioperl implementation for FAST::Bio::AnnotationCollectionI...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC - Search in distribution- FAST::Bio::AnnotationCollectionI - Interface for annotation collections
- FAST::Bio::AnnotationI - Annotation interface
- FAST::Bio::Seq - Sequence object, with features
- 22 more results from FAST »
Bio::DB::BioSQL::AnnotationCollectionAdaptor - DESCRIPTION of Object
Describe the object here...
CJFIELDS/BioPerl-DB-1.006900 - 15 Apr 2011 19:35:57 UTC - Search in distribution- Bio::DB::BioSQL::Pg::AnnotationCollectionAdaptorDriver - DESCRIPTION of Object
- Bio::DB::BioSQL::mysql::AnnotationCollectionAdaptorDriver - DESCRIPTION of Object
- Bio::DB::BioSQL::Oracle::AnnotationCollectionAdaptorDriver - DESCRIPTION of Object
Bio::Palantir - core classes and utilities for Bio::Palantir
This distribution is the base of the "Bio::Palantir" module collection designed as a toolbox for handling the post-processing of antiSMASH report data (<https://antismash.secondarymetabolites.org>) and improving in some aspects its annotation of NRPS...
LMEUNIER/Bio-Palantir-0.211420 - 22 May 2021 20:37:07 UTC - Search in distribution
Bio::NEXUS
This User Manual explains the motivation for developing the Bio::NEXUS library, the principles underlying its organization, and its use in developing software for evolutionary informatics. This manual also provides information on how to use two demon...
ARLIN/Bio-NEXUS-0.78 - 10 Feb 2012 13:31:13 UTC - Search in distribution
get_datasets.pl - A program to collect data for a list of features
This program will collect dataset values from a variety of sources, including features in a BioPerl Bio::DB::SeqFeature::Store database, binary wig files .wib loaded in a database using Bio::Graphics::Wiggle, bigWig files, bigBed files, Bam alignment...
TJPARNELL/Bio-ToolBox-1.691 - 13 Oct 2022 18:07:52 UTC - Search in distribution- get_binned_data.pl - A program to collect data in bins across a list of features.
- get_gene_regions.pl - A program to collect specific, often un-annotated, regions from genes.
- get_relative_data.pl - A program to collect data in bins around a relative position.
- 4 more results from Bio-ToolBox »
Bio::WGS2NCBI - module to assist in submitting whole genome sequencing projects to NCBI
This module documents the four actions (prepare, process, convert and compress) that are available to users of the wgs2ncbi script. Each of these steps is configured by one or more configuration files. In the documentation below, the relevant fields ...
RVOSA/Bio-WGS2NCBI-v0.1.2 - 23 Jan 2020 15:54:29 UTC - Search in distribution
Alien::SeqAlignment::hmmer3 - find, build and install the hmmer3 tools
This distribution provides HMMER3 so that it can be used by other Perl distributions that are on CPAN. The source code will be downloaded from the HMMER3 website, if the HMMER3 is not found in the system path. The url used is : http://eddylab.org/sof...
CHRISARG/Alien-SeqAlignment-hmmer3-0.03 - 24 Mar 2024 03:13:58 UTC - Search in distribution
Data::Type::RFC - request for comments on the design of Data::Type
This is the API documentation. Every candidate datatype must be sustain the following conventions before it should be released. Comments are requested....
MUENALAN/Data-Type-0.02.02 - 31 Dec 2009 13:48:47 UTC - Search in distribution
Bio::ViennaNGS - A Perl distribution for Next-Generation Sequencing (NGS) data analysis
Bio::ViennaNGS is a distribution of Perl modules and utilities for building efficient Next-Generation Sequencing (NGS) analysis pipelines. It covers various aspects of NGS data analysis, including (but not limited to) conversion of sequence annotatio...
MTW/Bio-ViennaNGS-v0.19.2 - 11 Dec 2018 13:25:00 UTC - Search in distribution
Bio::Cluster::UniGene - UniGene object
This UniGene object implements the Bio::Cluster::UniGeneI interface for the representation if UniGene clusters in Bioperl. It is returned by the Bio::ClusterIO parser for unigene format and contains all the data associated with one UniGene record. Th...
CJFIELDS/Bio-Cluster-1.7.3 - 01 Oct 2018 04:35:53 UTC - Search in distribution
Bio::MAGE::Experiment::Experiment - Class for the MAGE-OM API
From the MAGE-OM documentation for the "Experiment" class: The Experiment is the collection of all the BioAssays that are related by the ExperimentDesign....
JASONS/Bio-MAGE-20030502.3 - 14 May 2007 10:56:09 UTC - Search in distribution- Bio::MAGE::DesignElement::CompositeSequence - Class for the MAGE-OM API
Bio::Network::IO::dip_tab - class for parsing interaction data in DIP tab-delimited format
The Database of Interacting Proteins (DIP) is a protein interaction database (see <http://dip.doe-mbi.ucla.edu/dip/Main.cgi>). The species-specific subsets of the DIP database are provided in a simple, tab-delimited format. The tab-separated columns ...
CJFIELDS/BioPerl-Network-1.006902 - 07 Nov 2011 16:27:40 UTC - Search in distribution- Bio::Network::Interaction - describes a protein-protein interaction
Bio::DOOP::Util::Search - Useful methods for easy search
Collection of utilities handling large queries. Most of the methods return arrayrefs of motifs, sequences or clusters....
RAZZOR/Bio-DOOP-DOOP-1.04 - 17 Aug 2009 12:59:38 UTC - Search in distribution
Bio::SeqFeature::Annotated - PLEASE PUT SOMETHING HERE
None yet, complain to authors....
CJFIELDS/Bio-FeatureIO-1.6.905 - 05 Sep 2014 17:34:58 UTC - Search in distribution
Bio::Chado::Schema::Result::Sequence::Feature
A feature is a biological sequence or a section of a biological sequence, or a collection of such sections. Examples include genes, exons, transcripts, regulatory regions, polypeptides, protein domains, chromosome sequences, sequence variations, cros...
RBUELS/Bio-Chado-Schema-0.20000 - 06 Jul 2012 19:06:31 UTC - Search in distribution
Bio::Graphics::FeatureFile - A set of Bio::Graphics features, stored in a file
The Bio::Graphics::FeatureFile module reads and parses files that describe sequence features and their renderings. It accepts both GFF format and a more human-friendly file format described below. Once a FeatureFile object has been initialized, you c...
CJFIELDS/Bio-Graphics-2.40 - 16 Dec 2016 04:50:36 UTC - Search in distribution