Search results for "Bio::Annotation::Target"
Bio::Annotation::Target - Provides an object which represents a target (ie, a similarity hit) from one object to something in another database
Provides an object which represents a target (ie, a similarity hit) from one object to something in another database without prescribing what is in the other database...
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC - Search in distribution- Bio::DasI - DAS-style access to a feature database
- Bio::SeqUtils - Additional methods for PrimarySeq objects
- Bio::SeqIO::scf - .scf file input/output stream
- 2 more results from BioPerl »
FAST::Bio::Annotation::Target - Provides an object which represents a target (ie, a similarity hit) from one object to something in another database
Provides an object which represents a target (ie, a similarity hit) from one object to something in another database without prescribing what is in the other database...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC - Search in distribution- FAST::Bio::SeqIO::scf - .scf file input/output stream
- FAST::Bio::SeqIO::game::gameWriter - a class for writing game-XML
- FAST::Bio::AlignIO::stockholm - stockholm sequence input/output stream
Bio::Das::Feature - A genomic annotation
A Bio::Das::Segment::Feature object contains information about a feature on the genome retrieve from a DAS server. Each feature -- also known as an "annotation" -- has a start and end position on the genome relative to a reference sequence, as well a...
LDS/Bio-Das-1.17 - 29 Jun 2010 19:43:55 UTC - Search in distribution
Bio::DB::GFF - Storage and retrieval of sequence annotation data
Bio::DB::GFF provides fast indexed access to a sequence annotation database. It supports multiple database types (ACeDB, relational), and multiple schemas through a system of adaptors and aggregators. The following operations are supported by this mo...
CJFIELDS/Bio-DB-GFF-1.7.4 - 08 Jan 2020 20:41:58 UTC - Search in distribution- Bio::DB::GFF::Feature - A relative segment identified by a feature type
- Bio::DB::GFF::Adaptor::dbi::pg - Database adaptor for a specific postgres schema
- Bio::DB::GFF::Adaptor::dbi::mysql - Database adaptor for a specific mysql schema
- 2 more results from Bio-DB-GFF »
get_intersecting_features.pl - A program to pull out overlapping features from the database.
This program will take a list of reference features and identify target features which intersect them. The reference features may be either named features (name and type) or genomic regions (chromosome, start, stop). By default, the search region for...
TJPARNELL/Bio-ToolBox-1.691 - 13 Oct 2022 18:07:52 UTC - Search in distribution- Bio::ToolBox::Data - Reading, writing, and manipulating data structure
- Bio::ToolBox::Data::Stream - Read, Write, and Manipulate Data File Line by Line
Bio::DB::SeqFeature - Normalized feature for use with Bio::DB::SeqFeature::Store
The Bio::DB::SeqFeature object is the default SeqFeature class stored in Bio::DB::SeqFeature databases. It implements both the Bio::DB::SeqFeature::NormalizedFeatureI and Bio::DB::SeqFeature::NormalizedTableFeatureI interfaces, which means that its s...
CJFIELDS/Bio-DB-SeqFeature-1.7.4 - 09 Jan 2020 04:03:49 UTC - Search in distribution- Bio::DB::SeqFeature::Store::GFF3Loader - GFF3 file loader for Bio::DB::SeqFeature::Store
- Bio::DB::SeqFeature::NormalizedFeature - Normalized feature for use with Bio::DB::SeqFeature::Store
Bio::Graphics::Panel - Generate GD images of Bio::Seq objects
The Bio::Graphics::Panel class provides drawing and formatting services for any object that implements the Bio::SeqFeatureI interface, including Ace::Sequence::Feature and Das::Segment::Feature objects. It can be used to draw sequence annotations, ph...
CJFIELDS/Bio-Graphics-2.40 - 16 Dec 2016 04:50:36 UTC - Search in distribution
Bio::AlignIO::stockholm - stockholm sequence input/output stream
This object can transform Bio::Align::AlignI objects to and from stockholm flat file databases. This has been completely refactored from the original stockholm parser to handle annotation data and now includes a write_aln() method for (almost) comple...
CJFIELDS/Bio-AlignIO-stockholm-1.7.3 - 25 Sep 2018 00:14:27 UTC - Search in distribution
Bio::SeqFeature::Annotated - PLEASE PUT SOMETHING HERE
None yet, complain to authors....
CJFIELDS/Bio-FeatureIO-1.6.905 - 05 Sep 2014 17:34:58 UTC - Search in distribution