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Search results for "Bio::Annotation::Tree"

Bio::Annotation::Tree - Provide a tree as an annotation to a Bio::AnnotatableI object River stage two • 60 direct dependents • 65 total dependents

Provides a Bio::AnnotationI object which contains a Bio::Tree::TreeI, which can be added to a Bio::AnnotationCollectionI, which in turn be attached to a Bio::AnnotatableI (typically a Bio::AlignI object)...

CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC - Search in distribution

FAST::Bio::Annotation::TagTree - AnnotationI with tree-like hierarchal key-value relationships ('structured tags') that can be represented as simple text. River stage zero No dependents

This takes tagged data values and stores them in a hierarchal structured element-value hierarchy (complements of Chris Mungall's Data::Stag module). Data can then be represented as text using a variety of output formats (indention, itext, xml, spxr)....

DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC - Search in distribution

GO::AppHandle - Gene Ontology Data API handle River stage zero No dependents

This is a module for accessing Gene Ontology data sources, e.g the GO relational database. It defines a set of methods that provide a consistent interface independent of the way the GO data is stored. For an explanation of the GO project, please visi...

SJCARBON/go-db-perl-0.04 - 21 Dec 2009 21:56:44 UTC - Search in distribution

pod::INSTALL River stage zero No dependents

LDS/GBrowse-2.56 - 15 Jan 2017 21:29:11 UTC - Search in distribution

Bio::NEXUS River stage one • 1 direct dependent • 1 total dependent

This User Manual explains the motivation for developing the Bio::NEXUS library, the principles underlying its organization, and its use in developing software for evolutionary informatics. This manual also provides information on how to use two demon...

ARLIN/Bio-NEXUS-0.78 - 10 Feb 2012 13:31:13 UTC - Search in distribution

format-tree.pl - Format (and annotate) trees for printing River stage one • 9 direct dependents • 9 total dependents

DBAURAIN/Bio-MUST-Core-0.240390 - 08 Feb 2024 21:02:36 UTC - Search in distribution

Data::Type::RFC - request for comments on the design of Data::Type River stage zero No dependents

This is the API documentation. Every candidate datatype must be sustain the following conventions before it should be released. Comments are requested....

MUENALAN/Data-Type-0.02.02 - 31 Dec 2009 13:48:47 UTC - Search in distribution

Bio::KBase::CDMI::Client River stage zero No dependents

RDO/Bio-KBase-0.06 - 15 Aug 2012 23:56:34 UTC - Search in distribution

Bio::Network::ProteinNet - a representation of a protein interaction graph. River stage zero No dependents

A ProteinNet is a representation of a protein interaction network. Its functionality comes from the Graph module of Perl and from BioPerl, the nodes or vertices in the network are Sequence objects. Nodes A node is one or more BioPerl sequence objects...

CJFIELDS/BioPerl-Network-1.006902 - 07 Nov 2011 16:27:40 UTC - Search in distribution

Bio::Phylo::NeXML::Writable - Superclass for objects that serialize to NeXML River stage two • 9 direct dependents • 18 total dependents

This is the superclass for all objects that can be serialized to NeXML (<http://www.nexml.org>)....

RVOSA/Bio-Phylo-v2.0.1 - 30 Oct 2017 19:50:35 UTC - Search in distribution

Bio::Tools::Run::Phylo::Gerp - Wrapper for GERP River stage one • 2 direct dependents • 2 total dependents

This is a wrapper for running the GERP (v2) programs 'gerpcol' and 'gerpelem' by Eugene Davydov (originally Gregory M. Cooper et al.). You can get details here: http://mendel.stanford.edu/sidowlab/. GERP can be used for phylogenetic footprinting/ sha...

CJFIELDS/BioPerl-Run-1.007003 - 08 Feb 2019 19:55:33 UTC - Search in distribution

Bio::Graphics::Panel - Generate GD images of Bio::Seq objects River stage one • 2 direct dependents • 2 total dependents

The Bio::Graphics::Panel class provides drawing and formatting services for any object that implements the Bio::SeqFeatureI interface, including Ace::Sequence::Feature and Das::Segment::Feature objects. It can be used to draw sequence annotations, ph...

CJFIELDS/Bio-Graphics-2.40 - 16 Dec 2016 04:50:36 UTC - Search in distribution
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