Search results for "Bio::DB::DBI"
Bio::DB::DBI - DESCRIPTION of Interface
Describe the interface here...
CJFIELDS/BioPerl-DB-1.006900 - 15 Apr 2011 19:35:57 UTC - Search in distribution- Bio::DB::DBI::Pg - DESCRIPTION of Object
- Bio::DB::DBI::base - base class for drivers implementing Bio::DB::DBI
- Bio::DB::DBI::mysql - DESCRIPTION of Object
- 18 more results from BioPerl-DB »
Bio::DB::GFF::Adaptor::dbi - Database adaptor for DBI (SQL) databases
This is the base class for DBI-based adaptors. It does everything except generating the text of the queries to be used. See the section QUERIES TO IMPLEMENT for the list of methods that must be implemented....
CJFIELDS/Bio-DB-GFF-1.7.4 - 08 Jan 2020 20:41:58 UTC - Search in distribution- Bio::DB::GFF::Adaptor::dbi::pg - Database adaptor for a specific postgres schema
- Bio::DB::GFF::Adaptor::dbi::mysql - Database adaptor for a specific mysql schema
- Bio::DB::GFF::Adaptor::dbi::pg_fts - Database adaptor for a specific postgres schema with a TSearch2 implementation
- 16 more results from Bio-DB-GFF »
Bio::DB::SeqFeature::Store::DBI::Pg - PostgreSQL implementation of Bio::DB::SeqFeature::Store
Bio::DB::SeqFeature::Store::Pg is the Pg adaptor for Bio::DB::SeqFeature::Store. You will not create it directly, but instead use Bio::DB::SeqFeature::Store->new() to do so. See Bio::DB::SeqFeature::Store for complete usage instructions. Using the Pg...
CJFIELDS/Bio-DB-SeqFeature-1.7.4 - 09 Jan 2020 04:03:49 UTC - Search in distribution- Bio::DB::SeqFeature::Store::DBI::mysql - Mysql implementation of Bio::DB::SeqFeature::Store
- Bio::DB::SeqFeature::Store::DBI::SQLite - SQLite implementation of Bio::DB::SeqFeature::Store
- Bio::DB::SeqFeature::Store::DBI::Iterator - utility methods for creating and iterating over SeqFeature records
- 15 more results from Bio-DB-SeqFeature »
Bio::DB::GFF::Adaptor::dbi::mysqlace - Unholy union between mysql GFF database and acedb database
CJFIELDS/Bio-DB-Ace-1.7.3
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25 Sep 2018 00:11:27 UTC
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- Bio::DB::GFF::Adaptor::dbi::oracleace - Unholy union between oracle GFF database and acedb database
- Bio::DB::GFF::Adaptor::ace - ace interface (for multiple inheritance)
Genex - Perl extension for processing data from a GeneX DB
The Genex module is the gateway to the enitre Genex.pm suite of tools for accessing data in a GeneX DB. By itself it consists of two utilities for connecting to a GeneX DB, the caching method "current_connection()" and the non-caching utility functio...
JASONS/Bio-Genex-2.6.0 - 06 Feb 2001 23:15:15 UTC - Search in distribution- DBUtils - a module for useful Database utilities
- Bio::Genex::Sample - Methods for processing data from the GeneX DB table: Sample
- Bio::Genex::Sample - Methods for processing data from the GeneX DB table: Sample
- 44 more results from Bio-Genex »
MCE::Shared - MCE extension for sharing data supporting threads and processes
This module provides data sharing capabilities for MCE supporting threads and processes. MCE::Hobo provides threads-like parallelization for running code asynchronously....
MARIOROY/MCE-Shared-1.886 - 13 Sep 2023 23:57:14 UTC - Search in distribution
GO::AppHandle - Gene Ontology Data API handle
This is a module for accessing Gene Ontology data sources, e.g the GO relational database. It defines a set of methods that provide a consistent interface independent of the way the GO data is stored. For an explanation of the GO project, please visi...
SJCARBON/go-db-perl-0.04 - 21 Dec 2009 21:56:44 UTC - Search in distribution
Data::Type - robust and extensible data- and valuetype system
A lot of CPAN modules have a common purpose: reporting if data has some "characteristics". Email::Valid is an illustrous example: reporting if a string has characteristics of an email address. The "address()" method reports this via returning 'yes' o...
MUENALAN/Data-Type-0.02.02 - 31 Dec 2009 13:48:47 UTC - Search in distribution
Data::Type - robust and extensible data- and valuetype system
This module delivers an easy, generic and unified interface to type related CPAN modules. They all have one common purpose: reporting if data has some "characteristics". And this module wraps that with a clean api....
MUENALAN/Workflow-Aline-0.03 - 31 Dec 2009 14:02:10 UTC - Search in distribution- Data::Type - robust and extensible data- and valuetype system
- Data::Type - robust and extensible data- and valuetype system
Audio::DB - Tools for generating relational databases of music files
Audio::DB is a series of modules for creating relational databases of music files directly from data stored in ID3 tags or from flatfiles of information of track information. Once created, Audio::DB provides various methods for creating reports and w...
TWH/Audio-DB-0.01 - 27 Feb 2005 17:04:31 UTC - Search in distribution- Audio::DB::Build - Tools for generating relational databases of MP3s
- Audio::DB::Adaptor::dbi::mysql - Database adaptor for a specific mysql schema
- Audio::DB::Adaptor::dbi::sqlite - Database adaptor for a specific mysql schema
XML::EasySQL - a two-way SQL/XML base class for Perl. It was written by Curtis Lee Fulton (http://fultron.net; curtisf@fultron.net).
XML::EasySQL is a two-way SQL/XML base class for Perl. It acts as an emulsifier for the oil and water that is SQL and XML. Features: o Two-way transforms between XML and SQL data o smart SQL updates: only altered tables are updated o unlimited tree d...
CURTISF/XML-EasySQL-1.2 - 11 Jun 2004 23:46:42 UTC - Search in distribution
Bundle::BioPerl - A bundle to install external CPAN modules used by BioPerl 1.5.2
The BioPerl distribution from http://bioperl.org contains code and modules that may use or require additional 'external' perl modules for advanced functionality. Many of the external modules are not contained within the standard Perl distribution. Th...
CJFIELDS/Bundle-BioPerl-2.1.9 - 16 Jan 2015 20:05:40 UTC - Search in distribution
gmod_chado_fts_prep.pl - prepares a Chado schema to use full text searching
note about pg version note about all_feature_names materialized view...
SCAIN/Bio-DB-Das-Chado-0.35a - 07 Apr 2015 23:02:17 UTC - Search in distribution- Bio::DB::Das::Chado - DAS-style access to a chado database
Bio::DB::EUtilities - Webagent which interacts with and retrieves data from NCBI's eUtils.
This is a general webagent which posts and retrieves data to NCBI's eUtils service using their CGI interface. A separate project, currently present in BioPerl-Run, utilizes the SOAP-based interface for eUtils. A full explanation of the eUtils interfa...
CJFIELDS/Bio-EUtilities-1.77 - 09 Mar 2020 18:59:57 UTC - Search in distribution
Bio::Homology::InterologWalk - Retrieve, prioritise and visualize putative Protein-Protein Interactions through interolog mapping
A common activity in computational biology is to mine protein-protein interactions from publicly available databases to build *Protein-Protein Interaction* (PPI) datasets. In many instances, however, the number of experimentally obtained annotated PP...
GGALLONE/Bio-Homology-InterologWalk-0.58 - 01 Feb 2012 12:31:34 UTC - Search in distribution
Bio::GMOD::GenericGenePage::Chado
SCAIN/Bio-GMOD-GenericGenePage-0.12
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24 Mar 2010 19:38:26 UTC
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Bio::DB::GenericWebAgent - helper base class for parameter-based remote server access and response retrieval.
WARNING: Please do NOT spam the web servers with multiple requests. Bio::DB::GenericWebAgent is a generic wrapper around a web agent (LWP::UserAgent), an object which can retain, format, and build parameters for the user agent (Bio::ParameterBaseI), ...
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC - Search in distribution
Bio::ToolBox::db_helper::config
This module accesses the biotoolbox configuration file. This file stores multiple database connection settings. It also stores the paths to various helper applications. The default location for the file is in the user's home directory. Alternatively,...
TJPARNELL/Bio-ToolBox-1.691 - 13 Oct 2022 18:07:52 UTC - Search in distribution
Bio::MAGETAB::Util::Persistence - A Tangram-based object persistence class for MAGE-TAB.
This class provides an object persistence mechanism for storing MAGE-TAB objects in a relational database. The class is, in effect, just a thin wrapper around a Tangram::Storage instance which implements most of the database interaction methods. The ...
TFRAYNER/Bio-MAGETAB-1.31 - 11 Apr 2014 15:00:10 UTC - Search in distribution