Search results for "Bio::DB::DBI::base"
Bio::DB::DBI::base - base class for drivers implementing Bio::DB::DBI
Don't instantiate this module directly. Instead instantiate one of the derived classes....
CJFIELDS/BioPerl-DB-1.006900 - 15 Apr 2011 19:35:57 UTC - Search in distribution- Bio::DB::SimpleDBContext - a base implementation of Bio::DB::DBContextI
- load_ontology.pl
- load_seqdatabase.pl
- 2 more results from BioPerl-DB »
MCE::Shared - MCE extension for sharing data supporting threads and processes
This module provides data sharing capabilities for MCE supporting threads and processes. MCE::Hobo provides threads-like parallelization for running code asynchronously....
MARIOROY/MCE-Shared-1.886 - 13 Sep 2023 23:57:14 UTC - Search in distribution
GO::AppHandle - Gene Ontology Data API handle
This is a module for accessing Gene Ontology data sources, e.g the GO relational database. It defines a set of methods that provide a consistent interface independent of the way the GO data is stored. For an explanation of the GO project, please visi...
SJCARBON/go-db-perl-0.04 - 21 Dec 2009 21:56:44 UTC - Search in distribution
Data::Type - robust and extensible data- and valuetype system
A lot of CPAN modules have a common purpose: reporting if data has some "characteristics". Email::Valid is an illustrous example: reporting if a string has characteristics of an email address. The "address()" method reports this via returning 'yes' o...
MUENALAN/Data-Type-0.02.02 - 31 Dec 2009 13:48:47 UTC - Search in distribution
Bio::DB::GFF - Storage and retrieval of sequence annotation data
Bio::DB::GFF provides fast indexed access to a sequence annotation database. It supports multiple database types (ACeDB, relational), and multiple schemas through a system of adaptors and aggregators. The following operations are supported by this mo...
CJFIELDS/Bio-DB-GFF-1.7.4 - 08 Jan 2020 20:41:58 UTC - Search in distribution- Bio::DB::GFF::RelSegment - Sequence segment with relative coordinate support
- Bio::DB::GFF::Adaptor::dbi - Database adaptor for DBI (SQL) databases
XML::EasySQL - a two-way SQL/XML base class for Perl. It was written by Curtis Lee Fulton (http://fultron.net; curtisf@fultron.net).
XML::EasySQL is a two-way SQL/XML base class for Perl. It acts as an emulsifier for the oil and water that is SQL and XML. Features: o Two-way transforms between XML and SQL data o smart SQL updates: only altered tables are updated o unlimited tree d...
CURTISF/XML-EasySQL-1.2 - 11 Jun 2004 23:46:42 UTC - Search in distribution
Bio::DB::Das::Chado - DAS-style access to a chado database
Bio::DB::Das::Chado allows DAS style access to a Chado database, getting SeqFeatureI-compliant BioPerl objects and allowing GBrowse to access a Chado database directly....
SCAIN/Bio-DB-Das-Chado-0.35a - 07 Apr 2015 23:02:17 UTC - Search in distribution
Bio::GMOD::GenericGenePage::Chado
SCAIN/Bio-GMOD-GenericGenePage-0.12
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24 Mar 2010 19:38:26 UTC
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Bio::DB::SeqFeature::Segment - Location-based access to genome annotation data
The segment object simplifies access to Bio::DB::SeqFeature store by acting as a placeholder for a region of the genome. You can replace this statement: @features = $db->features(-seq_id=>'Chr1', -start=>5000, -end=>6000, -types=>['mRNA','match','rep...
CJFIELDS/Bio-DB-SeqFeature-1.7.4 - 09 Jan 2020 04:03:49 UTC - Search in distribution- Bio::DB::SeqFeature::Store::Loader - Loader
- Bio::DB::SeqFeature::Store::GFF3Loader - GFF3 file loader for Bio::DB::SeqFeature::Store
- Bio::DB::SeqFeature::Store::GFF2Loader - GFF2 file loader for Bio::DB::SeqFeature::Store
- 1 more result from Bio-DB-SeqFeature »
Bio::DB::GenericWebAgent - helper base class for parameter-based remote server access and response retrieval.
WARNING: Please do NOT spam the web servers with multiple requests. Bio::DB::GenericWebAgent is a generic wrapper around a web agent (LWP::UserAgent), an object which can retain, format, and build parameters for the user agent (Bio::ParameterBaseI), ...
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC - Search in distribution