Search results for "Bio::DB::Flat"
Bio::DB::Flat - Interface for indexed flat files
This object provides the basic mechanism to associate positions in files with primary and secondary name spaces. Unlike Bio::Index::Abstract (see Bio::Index::Abstract), this is specialized to work with the "flat index" and BerkeleyDB indexed flat fil...
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC - Search in distribution- Bio::DB::Flat::BDB - Interface for BioHackathon standard BDB-indexed flat file
- Bio::DB::Flat::BinarySearch - BinarySearch search indexing system for sequence files
- Bio::DB::Flat::BDB::embl - embl adaptor for Open-bio standard BDB-indexed flat file
- 10 more results from BioPerl »
GO::Parser - parses all GO files formats and types
Module for parsing GO flat files; for examples of GO/OBO flatfile formats see: <ftp://ftp.geneontology.org/pub/go/ontology> <ftp://ftp.geneontology.org/pub/go/gene-associations> For a description of the various file formats, see: <http://www.geneonto...
CMUNGALL/go-perl-0.15 - 12 Jun 2013 16:22:41 UTC - Search in distribution
load_ontology.pl
This script loads a BioSQL database with an ontology. There are a number of options to do with where the BioSQL database is (ie, hostname, user for database, password, database name) followed by the database name you wish to load this into and then a...
CJFIELDS/BioPerl-DB-1.006900 - 15 Apr 2011 19:35:57 UTC - Search in distribution- load_seqdatabase.pl
- Bio::DB::BioSQL::TermAdaptor - DESCRIPTION of Object
- Bio::DB::Query::DBQueryResult - DESCRIPTION of Object
pod::INSTALL
LDS/GBrowse-2.56
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15 Jan 2017 21:29:11 UTC
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- pod::CONFIGURE_HOWTO
- pod::README-chado
- process_sgd.pl - Massage SGD annotation flat files into a version suitable for the Generic Genome Browser
Boulder::Genbank - Fetch Genbank data records as parsed Boulder Stones
Boulder::Genbank provides retrieval and parsing services for NCBI Genbank-format records. It returns Genbank entries in Stone format, allowing easy access to the various fields and values. Boulder::Genbank is a descendent of Boulder::Stream, and prov...
LDS/Boulder-1.30 - 14 Dec 2002 02:06:29 UTC - Search in distribution
Bio::DB::GFF - Storage and retrieval of sequence annotation data
Bio::DB::GFF provides fast indexed access to a sequence annotation database. It supports multiple database types (ACeDB, relational), and multiple schemas through a system of adaptors and aggregators. The following operations are supported by this mo...
CJFIELDS/Bio-DB-GFF-1.7.4 - 08 Jan 2020 20:41:58 UTC - Search in distribution- Bio::DB::GFF::Typename - The name of a feature type
FAST::Bio::Seq - Sequence object, with features
A Seq object is a sequence with sequence features placed on it. The Seq object contains a PrimarySeq object for the actual sequence and also implements its interface. In Bioperl we have 3 main players that people are going to use frequently FAST::Bio...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC - Search in distribution- FAST::Bio::DB::Taxonomy::flatfile - An implementation of FAST::Bio::DB::Taxonomy which uses local flat files
Audio::DB::Build - Tools for generating relational databases of MP3s
Audio::DB is a module for creating relational databases of MP3 files directly from data stored in ID3 tags or from flatfiles of information of track information. Once created, Audio::DB provides various methods for creating reports and web pages of y...
TWH/Audio-DB-0.01 - 27 Feb 2005 17:04:31 UTC - Search in distribution
Bio::DB::TFBS::transfac_pro - An implementation of Bio::DB::TFBS which uses local flat files for transfac pro
This is an implementation which uses local flat files and the DB_File module RECNO data structures to manage a local copy of the Transfac Pro TFBS database. Required database files require a license which can be obtained via http://www.biobase-intern...
CJFIELDS/Bio-DB-TFBS-1.7.3 - 25 Sep 2018 00:20:12 UTC - Search in distribution
Bio::Graphics::FeatureFile - A set of Bio::Graphics features, stored in a file
The Bio::Graphics::FeatureFile module reads and parses files that describe sequence features and their renderings. It accepts both GFF format and a more human-friendly file format described below. Once a FeatureFile object has been initialized, you c...
CJFIELDS/Bio-Graphics-2.40 - 16 Dec 2016 04:50:36 UTC - Search in distribution