Bio::DB::GFF::Adaptor::berkeleydb - Bio::DB::GFF database adaptor for in-memory databases

++

++

This adaptor implements a berkeleydb-indexed version of Bio::DB::GFF. It requires the DB_File and Storable modules. It can be used to store and retrieve short to medium-length GFF files of several million features in length....

CJFIELDS/Bio-DB-GFF-1.7.4 - 08 Jan 2020 20:41:58 UTC - Search in distribution

• Bio::DB::GFF::Adaptor::berkeleydb::iterator - iterator for Bio::DB::GFF::Adaptor::berkeleydb
• Bio::DB::GFF - Storage and retrieval of sequence annotation data

pod::README-lucegene

++

++

This adaptor allows you to run GBrowse with fast indexed GFF files without the administrative overhead of MySQL or PostgreSQL. Lucene is a Java Apache open-source project with very high performance for searching large text databases. It runs as fast ...

LDS/GBrowse-2.56 - 15 Jan 2017 21:29:11 UTC - Search in distribution

Bio::DB::SeqFeature::Store - Storage and retrieval of sequence annotation data

++

++

Bio::DB::SeqFeature::Store implements the Bio::SeqFeature::CollectionI interface to allow you to persistently store Bio::SeqFeatureI objects in a database and to later to retrieve them by a variety of searches. This module is similar to the older Bio...

CJFIELDS/Bio-DB-SeqFeature-1.7.4 - 09 Jan 2020 04:03:49 UTC - Search in distribution

• Bio::DB::SeqFeature::Store::memory - In-memory implementation of Bio::DB::SeqFeature::Store
• Bio::DB::SeqFeature::Store::berkeleydb - Storage and retrieval of sequence annotation data in Berkeleydb files

Bio::Graphics::FeatureDir - A directory of feature files and conf files

++

++

This class implements most of the methods of Bio::Graphics::FeatureFile, but stores the data files and features in a directory indexed by the Bio::DB::SeqFeature::Store::berkeleydb adaptor. Therefore it is fast. Methods POD ERRORS Hey! The above docu...

CJFIELDS/Bio-Graphics-2.40 - 16 Dec 2016 04:50:36 UTC - Search in distribution