Search results for "Bio::DB::GFF::Aggregator::match"
Bio::DB::GFF::Aggregator::match - Match aggregator
This aggregator is used for Sequence Ontology-compatible gapped alignments, in which there is a single top-level alignment called "match" and a series of subalignments called either "similarity" or "HSP". Also see the "alignment" aggregator....
CJFIELDS/Bio-DB-GFF-1.7.4 - 08 Jan 2020 20:41:58 UTC - Search in distribution- Bio::DB::GFF - Storage and retrieval of sequence annotation data
- Bio::DB::GFF::Aggregator - Aggregate GFF groups into composite features
- Bio::DB::GFF::Feature - A relative segment identified by a feature type
Bio::DB::GFF::Aggregator::match_gap - GFF3 match aggregator
This aggregator is used for GFF3 style gapped alignments, in which there is a single feature of method 'match' with a 'Gap' attribute. The 'Gap' attribute's format consists of a series of (operartion,length) pairs separated by space characters, for e...
LDS/GBrowse-2.56 - 15 Jan 2017 21:29:11 UTC - Search in distribution
Bio::DB::Das::Chado - DAS-style access to a chado database
Bio::DB::Das::Chado allows DAS style access to a Chado database, getting SeqFeatureI-compliant BioPerl objects and allowing GBrowse to access a Chado database directly....
SCAIN/Bio-DB-Das-Chado-0.35a - 07 Apr 2015 23:02:17 UTC - Search in distribution
Bio::DB::SeqFeature::Store - Storage and retrieval of sequence annotation data
Bio::DB::SeqFeature::Store implements the Bio::SeqFeature::CollectionI interface to allow you to persistently store Bio::SeqFeatureI objects in a database and to later to retrieve them by a variety of searches. This module is similar to the older Bio...
CJFIELDS/Bio-DB-SeqFeature-1.7.4 - 09 Jan 2020 04:03:49 UTC - Search in distribution