Bio::DB::Query::BioQuery - Object representing a query on a bioperldb

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A BioQuery is a high level query on a biological database. It allows queries to be specified regardless of the underlying schema. Although a BioQuery can be translated into a corresponding SQL query or series of SQL queries, it is not always desirabl...

CJFIELDS/BioPerl-DB-1.006900 - 15 Apr 2011 19:35:57 UTC - Search in distribution

• Bio::DB::Query::SqlQuery - Object representing an SQL Query
• Bio::DB::Query::AbstractQuery - Abstract Query class
• Bio::DB::Query::DBQueryResult - DESCRIPTION of Object
• 6 more results from BioPerl-DB »

Bio::DB::HTS::Query - Object representing the query portion of a BAM/SAM alignment

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This is a simple Bio::SeqFeatureI object that represents the query part of a SAM alignment. Methods POD ERRORS Hey! The above document had some coding errors, which are explained below: Around line 8: =over is the last thing in the document?!...

AVULLO/Bio-DB-HTS-3.01 - 23 Apr 2019 13:51:11 UTC - Search in distribution

Bio::DB::Bam::Query - Object representing the query portion of a BAM/SAM alignment

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This is a simple Bio::SeqFeatureI object that represents the query part of a SAM alignment. Methods POD ERRORS Hey! The above document had some coding errors, which are explained below: Around line 8: =over is the last thing in the document?!...

LDS/Bio-SamTools-1.43 - 12 Feb 2016 19:33:32 UTC - Search in distribution

Bio::DB::Query::WebQuery - Helper class for web-based sequence queryies

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Do not use this class directly. See Bio::DB::QueryI and one of the implementor classes (such as Bio::DB::Query::GenBank) for information. Those writing subclasses must define _get_params() and _parse_response(), and possibly override _request_method(...

CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC - Search in distribution

• Bio::DB::QueryI - Object Interface to queryable sequence databases

Bio::DB::Query::GenBank - Build a GenBank Entrez Query

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This class encapsulates NCBI Entrez queries. It can be used to store a list of GI numbers, to translate an Entrez query expression into a list of GI numbers, or to count the number of terms that would be returned by a query. Once created, the query o...

CJFIELDS/Bio-DB-NCBIHelper-1.7.8 - 15 Dec 2023 04:25:18 UTC - Search in distribution

Bio::DB::SoapEUtilities::GQueryAdaptor - Handle for Entrez SOAP GlobalQuery items

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This adaptor provides an iterator ("next_query()") and other convenience functions for parsing NCBI Entrez EUtility "egquery" SOAP results....

CJFIELDS/BioPerl-Run-1.007003 - 08 Feb 2019 19:55:33 UTC - Search in distribution