Search results for "Bio::DB::RefSeq"
Bio::DB::RefSeq - Database object interface for RefSeq retrieval
Allows the dynamic retrieval of sequence objects Bio::Seq from the RefSeq nucleotide database using the dbfetch script at EBI: http://www.ebi.ac.uk/Tools/dbfetch/dbfetch At this time the module specifically retrieves nucleotide sequences only. In ord...
CJFIELDS/Bio-DB-RefSeq-1.7.4 - 07 Dec 2019 22:10:26 UTC - Search in distribution
pod::INSTALL
LDS/GBrowse-2.56
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15 Jan 2017 21:29:11 UTC
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- pod::CONFIGURE_HOWTO
- ucsc_genes2gff.pl - Convert UCSC Genome Browser-format gene files into GFF files suitable for loading into gbrowse
- ucsc_genes2gff.pl - Convert UCSC Genome Browser-format gene files into GFF files suitable for loading into gbrowse
- 3 more results from GBrowse »
get_gene_regions.pl - A program to collect specific, often un-annotated, regions from genes.
This program will collect specific regions from annotated genes and/or transcripts. Often these regions are not explicitly defined in the source GFF3 annotation, necessitating a script to pull them out. These regions include the start and stop sites ...
TJPARNELL/Bio-ToolBox-1.691 - 13 Oct 2022 18:07:52 UTC - Search in distribution
Bio::DB::GFF - Storage and retrieval of sequence annotation data
Bio::DB::GFF provides fast indexed access to a sequence annotation database. It supports multiple database types (ACeDB, relational), and multiple schemas through a system of adaptors and aggregators. The following operations are supported by this mo...
CJFIELDS/Bio-DB-GFF-1.7.4 - 08 Jan 2020 20:41:58 UTC - Search in distribution- Bio::DB::GFF::RelSegment - Sequence segment with relative coordinate support
- Bio::DB::GFF::Segment - Simple DNA segment object
- Bio::DB::GFF::Adaptor::dbi::pg - Database adaptor for a specific postgres schema
- 1 more result from Bio-DB-GFF »
Physeter::Manual - User Guide for Physeter
DBAURAIN/Bio-MUST-Apps-Physeter-0.213470
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13 Dec 2021 11:04:21 UTC
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Bio::ViennaNGS - A Perl distribution for Next-Generation Sequencing (NGS) data analysis
Bio::ViennaNGS is a distribution of Perl modules and utilities for building efficient Next-Generation Sequencing (NGS) analysis pipelines. It covers various aspects of NGS data analysis, including (but not limited to) conversion of sequence annotatio...
MTW/Bio-ViennaNGS-v0.19.2 - 11 Dec 2018 13:25:00 UTC - Search in distribution
Bio::DB::GenBank - Database object interface to GenBank
Allows the dynamic retrieval of Bio::Seq sequence objects from the GenBank database at NCBI, via an Entrez query. WARNING: Please do NOT spam the Entrez web server with multiple requests. NCBI offers Batch Entrez for this purpose. Note that when quer...
CJFIELDS/Bio-DB-NCBIHelper-1.7.8 - 15 Dec 2023 04:25:18 UTC - Search in distribution- Bio::DB::NCBIHelper - A collection of routines useful for queries to NCBI databases.
Bio::Das::Feature - A genomic annotation
A Bio::Das::Segment::Feature object contains information about a feature on the genome retrieve from a DAS server. Each feature -- also known as an "annotation" -- has a start and end position on the genome relative to a reference sequence, as well a...
LDS/Bio-Das-1.17 - 29 Jun 2010 19:43:55 UTC - Search in distribution
Bio::DOOP::Cluster - DoOP cluster object
This object represents a cluster. You can access its properties through the methods....
RAZZOR/Bio-DOOP-DOOP-1.04 - 17 Aug 2009 12:59:38 UTC - Search in distribution
Bio::SeqFeature::Lite - Lightweight Bio::SeqFeatureI class
This is a simple Bio::SeqFeatureI-compliant object that is compatible with Bio::Graphics::Panel. With it you can create lightweight feature objects for drawing. All methods are as described in Bio::SeqFeatureI with the following additions: The new() ...
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC - Search in distribution
Bio::ConnectDots::ConnectDots - Top level class for 'connect-the-dots'
This is the top level class for 'Connect the Dots'. At present, it mainly provides methods for running queries. Connect the Dots is a general data integration framework targeted at translating biological identifiers across multiple transitive databas...
DBURDICK/Bio-ConnectDots-1.0.2 - 07 Apr 2005 22:06:44 UTC - Search in distribution
Bio::DB::Das::Chado::Segment - DAS-style access to a chado database
Bio::DB::Das::Chado::Segment is a simplified alternative interface to sequence annotation databases used by the distributed annotation system. In this scheme, the genome is represented as a series of landmarks. Each Bio::DB::Das::Chado::Segment objec...
SCAIN/Bio-DB-Das-Chado-0.35a - 07 Apr 2015 23:02:17 UTC - Search in distribution