Search results for "Bio::DB::Taxonomy"
Bio::DB::Taxonomy - Access to a taxonomy database
This is a front end module for access to a taxonomy database....
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC - Search in distribution- Bio::DB::Taxonomy::list - An implementation of Bio::DB::Taxonomy that accepts lists of words to build a database
- Bio::DB::Taxonomy::silva - Use the Silva taxonomy
- Bio::DB::Taxonomy::flatfile - Use the NCBI taxonomy from local indexed flat files
- 5 more results from BioPerl »
FAST::Bio::DB::Taxonomy - Access to a taxonomy database
This is a front end module for access to a taxonomy database....
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC - Search in distribution- FAST::Bio::DB::Taxonomy::list - An implementation of FAST::Bio::DB::Taxonomy that accepts lists of words to build a database
- FAST::Bio::DB::Taxonomy::entrez - Taxonomy Entrez driver
- FAST::Bio::DB::Taxonomy::flatfile - An implementation of FAST::Bio::DB::Taxonomy which uses local flat files
- 1 more result from FAST »
Bio::DB::Taxonomy::entrez - Taxonomy Entrez driver
A driver for querying NCBI Entrez Taxonomy database....
CJFIELDS/Bio-DB-NCBIHelper-1.7.8 - 15 Dec 2023 04:25:18 UTC - Search in distribution
Bio::DB::Taxonomy::sqlite - SQLite-based implementation of Bio::DB::Taxonomy::flatfile
This is an implementation of Bio::DB::Taxonomy which stores and accesses the NCBI taxonomy using a simple SQLite3 database stored locally on disk. With this implementation, one can do the same basic searches as with the 'flatfile' database. A test lo...
CJFIELDS/Bio-DB-Taxonomy-sqlite-1.7.3 - 02 Mar 2020 05:53:54 UTC - Search in distribution
Bio::DB::TFBS - Access to a Transcription Factor Binding Site database
This is a front end module for access to a Transcription Factor Binding Site database....
CJFIELDS/Bio-DB-TFBS-1.7.3 - 25 Sep 2018 00:20:12 UTC - Search in distribution- Bio::DB::TFBS::transfac_pro - An implementation of Bio::DB::TFBS which uses local flat files for transfac pro
Physeter::Manual - User Guide for Physeter
DBAURAIN/Bio-MUST-Apps-Physeter-0.213470
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13 Dec 2021 11:04:21 UTC
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Bio::Community::IO - Read and write files that describe communities
A Bio::Community::IO object implement methods to read and write communities in formats used by popular programs such as BIOM, GAAS, QIIME, Unifrac, or as generic tab-separated tables. The format should be automatically detected though it can be manua...
FANGLY/Bio-Community-0.001008 - 08 Jan 2016 20:06:45 UTC - Search in distribution
Bio::DB::Biblio::eutils - access to PubMed's bibliographic query service
CDRAUG/Bio-Biblio-1.70
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24 Mar 2013 00:19:52 UTC
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Bio::DB::SoapEUtilities - Interface to the NCBI Entrez web service *BETA*
This module allows the user to query the NCBI Entrez database via its SOAP (Simple Object Access Protocol) web service (described at <http://eutils.ncbi.nlm.nih.gov/entrez/eutils/soap/v2.0/DOC/esoap_help.h tml>). The basic tools ("einfo, esearch, eli...
CJFIELDS/BioPerl-Run-1.007003 - 08 Feb 2019 19:55:33 UTC - Search in distribution- Bio::Tools::Run::Phylo::Semphy - Wrapper for Semphy
- Bio::Tools::Run::Phylo::Phast::PhyloFit - Wrapper for phyloFit
- Bio::Tools::Run::Phylo::Phast::PhastCons - Wrapper for footprinting using phastCons
- 3 more results from BioPerl-Run »
Bio::LITE::Taxonomy - Lightweight and efficient taxonomic tree manager
This module provides easy and efficient access to different taxonomies (NCBI and RDP) with minimal dependencies and without intermediate databases. This module should be used through specific taxonomic interfaces (e.g. Bio::LITE::Taxonomy::NCBI or Bi...
MOTIF/Bio-LITE-Taxonomy-0.07 - 24 May 2011 11:20:38 UTC - Search in distribution
Bio::LITE::Taxonomy::NCBI - Lightweight and efficient NCBI taxonomic manager
This module provides easy and efficient access to the NCBI taxonomy with minimal dependencies and without intermediary databases. This module is not part of the Bioperl bundle. For bioperl alternatives see the "SEE ALSO" section of this document....
MOTIF/Bio-LITE-Taxonomy-NCBI-0.1 - 20 May 2015 08:51:23 UTC - Search in distribution
Bio::LITE::Taxonomy::NCBI::Gi2taxid - Mappings of NCBI GI's to Taxids fast and with very low memory footprint.
The NCBI site offers a file to map gene and protein sequences (GIs) with their corresponding taxon of origin (Taxids). If you want to use this information inside a Perl script you will find that (given the high amount of sequences available) it is fa...
MOTIF/Bio-LITE-Taxonomy-NCBI-Gi2taxid-0.13 - 03 Dec 2014 12:08:40 UTC - Search in distribution