Search results for "Bio::DB::Taxonomy::flatfile"
Bio::DB::Taxonomy::flatfile - Use the NCBI taxonomy from local indexed flat files
This is an implementation of Bio::DB::Taxonomy which stores and accesses the NCBI taxonomy using flat files stored locally on disk and indexed using the DB_File module RECNO data structure for fast retrieval. The required database files, nodes.dmp an...
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC - Search in distribution- Bio::Taxon - A node in a represented taxonomy
- Bio::DB::Taxonomy - Access to a taxonomy database
- bp_taxonomy2tree - Building a taxonomic tree based on the full lineages of a set of species names
- 1 more result from BioPerl »
FAST::Bio::DB::Taxonomy::flatfile - An implementation of FAST::Bio::DB::Taxonomy which uses local flat files
This is an implementation which uses local flat files and the DB_File module RECNO data structures to manage a local copy of the NCBI Taxonomy database. Required database files can be obtained from ftp://ftp.ncbi.nih.gov/pub/taxonomy/taxdump.tar.gz...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC - Search in distribution- FAST::Bio::Taxon - A node in a represented taxonomy
- FAST::Bio::DB::Taxonomy - Access to a taxonomy database
- FAST::Bio::DB::Taxonomy::entrez - Taxonomy Entrez driver
Bio::DB::Taxonomy::sqlite - SQLite-based implementation of Bio::DB::Taxonomy::flatfile
This is an implementation of Bio::DB::Taxonomy which stores and accesses the NCBI taxonomy using a simple SQLite3 database stored locally on disk. With this implementation, one can do the same basic searches as with the 'flatfile' database. A test lo...
CJFIELDS/Bio-DB-Taxonomy-sqlite-1.7.3 - 02 Mar 2020 05:53:54 UTC - Search in distribution
Bio::DB::Taxonomy::entrez - Taxonomy Entrez driver
A driver for querying NCBI Entrez Taxonomy database....
CJFIELDS/Bio-DB-NCBIHelper-1.7.8 - 15 Dec 2023 04:25:18 UTC - Search in distribution
Bio::DB::TFBS::transfac_pro - An implementation of Bio::DB::TFBS which uses local flat files for transfac pro
This is an implementation which uses local flat files and the DB_File module RECNO data structures to manage a local copy of the Transfac Pro TFBS database. Required database files require a license which can be obtained via http://www.biobase-intern...
CJFIELDS/Bio-DB-TFBS-1.7.3 - 25 Sep 2018 00:20:12 UTC - Search in distribution