Bio::DasI - DAS-style access to a feature database

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Bio::DasI is a simplified alternative interface to sequence annotation databases used by the distributed annotation system (see Bio::Das). In this scheme, the genome is represented as a series of features, a subset of which are named. Named features ...

CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC - Search in distribution

• Bio::Das::SegmentI - DAS-style access to a feature database
• Bio::Das::FeatureTypeI - Simple interface to Sequence Ontology feature types

DAS::GUS - DAS-style accession to a gus database

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LDS/GBrowse-2.56 - 15 Jan 2017 21:29:11 UTC - Search in distribution

• pod::README-chado
• DAS::GUS::Segment - DAS-style access to a GUS database
• lib/Legacy/Graphics/Browser.pm

Bio::DB::Das::Chado - DAS-style access to a chado database

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Bio::DB::Das::Chado allows DAS style access to a Chado database, getting SeqFeatureI-compliant BioPerl objects and allowing GBrowse to access a Chado database directly....

SCAIN/Bio-DB-Das-Chado-0.35a - 07 Apr 2015 23:02:17 UTC - Search in distribution

• Bio::DB::Das::Chado::Segment - DAS-style access to a chado database

lib/Bio/DB/BigBed.pm

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This module provides a high-level interface to Jim Kent's BigBed files, a type of indexed genome feature database that can be randomly accessed across the network. Please see http://genome.ucsc.edu/FAQ/FAQformat.html for information about creating th...

LDS/Bio-BigFile-1.07 - 24 Feb 2012 17:20:46 UTC - Search in distribution

Bio::Graphics::FeatureFile - A set of Bio::Graphics features, stored in a file

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The Bio::Graphics::FeatureFile module reads and parses files that describe sequence features and their renderings. It accepts both GFF format and a more human-friendly file format described below. Once a FeatureFile object has been initialized, you c...

CJFIELDS/Bio-Graphics-2.40 - 16 Dec 2016 04:50:36 UTC - Search in distribution