Search results for "Bio::Graph::Edge"
Bio::MAGETAB::Edge - MAGE-TAB edge class
This class is used to store information on edges in the experimental design graph described by a MAGE-TAB SDRF. Each Edge must link to both an input and an output Node. See the BaseClass class for superclass methods....
TFRAYNER/Bio-MAGETAB-1.31 - 11 Apr 2014 15:00:10 UTC - Search in distribution- Bio::MAGETAB::Node - Abstract node class
Bio::PhyloNetwork - Module to compute with Phylogenetic Networks
Phylogenetic Networks This is a module to work with phylogenetic networks. Phylogenetic networks have been studied over the last years as a richer model of the evolutionary history of sets of organisms than phylogenetic trees, because they take not o...
CJFIELDS/Bio-PhyloNetwork-1.7.3 - 25 Sep 2018 01:36:59 UTC - Search in distribution
Bio::Homology::InterologWalk - Retrieve, prioritise and visualize putative Protein-Protein Interactions through interolog mapping
A common activity in computational biology is to mine protein-protein interactions from publicly available databases to build *Protein-Protein Interaction* (PPI) datasets. In many instances, however, the number of experimentally obtained annotated PP...
GGALLONE/Bio-Homology-InterologWalk-0.58 - 01 Feb 2012 12:31:34 UTC - Search in distribution
Bio::Network::Edge - holds the names of pairs of Nodes
This class contains the names of the Nodes in a bi-molecular interaction. An Edge object is extremely simple as most of the experimental or biological detail goes into the Interaction objects....
CJFIELDS/BioPerl-Network-1.006902 - 07 Nov 2011 16:27:40 UTC - Search in distribution- Bio::Network::IO::dip_tab - class for parsing interaction data in DIP tab-delimited format
- Bio::Network::ProteinNet - a representation of a protein interaction graph.
Bio::Graphics::Glyph::whiskerplot - The whiskerplot glyph
This glyph is used for drawing features associated with numeric data using "box and whisker" style data points, which display the mean value, extreme ranges and first and third quartiles (or standard deviation). The boxes drawn by this glyph are simi...
CJFIELDS/Bio-Graphics-2.40 - 16 Dec 2016 04:50:36 UTC - Search in distribution- Bio::Graphics::Glyph::xyplot - The xyplot glyph
Bio::ConnectDots::SimpleGraph
This is a simple, hopefully fast undirected graph package. The only reason this exists is that the standard CPAN Graph pacakge, Graph::Base, is seriously broken. The package implements a small and eclectic assortment of standard graph algorithms that...
DBURDICK/Bio-ConnectDots-1.0.2 - 07 Apr 2005 22:06:44 UTC - Search in distribution
Bio::Chado::Schema::Result::Cv::CvtermRelationship
A relationship linking two cvterms. Each cvterm_relationship constitutes an edge in the graph defined by the collection of cvterms and cvterm_relationships. The meaning of the cvterm_relationship depends on the definition of the cvterm R refered to b...
RBUELS/Bio-Chado-Schema-0.20000 - 06 Jul 2012 19:06:31 UTC - Search in distribution
Bio::Ontology::SimpleGOEngine::GraphAdaptor - Graph adaptor for Bio::Ontology::SimpleGOEngine
This is an adaptor to simplify use of versions of the standard CPAN Graph module (old is versions 0.2x; new is 0.5x and beyond) within Bio::Ontology::SimpleGOEngine. Prior versions of this module supported Graph version older than 0.5, however we are...
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC - Search in distribution
FAST::Bio::Ontology::SimpleGOEngine::GraphAdaptor - Graph adaptor for FAST::Bio::Ontology::SimpleGOEngine
This is a think adaptor to simplify use of the old and new versions of the standard CPAN Graph module (old is versions 0.2x; new is 0.5x and beyond) within FAST::Bio::Ontology::SimpleGOEngine. This module implements only those Graph methods used by S...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC - Search in distribution