Search results for "Bio::LocatableSeq"
Bio::LocatableSeq - A Bio::PrimarySeq object with start/end points on it that can be projected into a MSA or have coordinates relative to another seq.
The LocatableSeq sequence object was developed mainly because the SimpleAlign object requires this functionality, and in the rewrite of the Sequence object we had to decide what to do with this. It is, to be honest, not well integrated with the rest ...
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC - Search in distribution- Bio::Search::Tiling::MapTileUtils - utilities for manipulating closed intervals for an HSP tiling algorithm
- Bio::Seq::LargeLocatableSeq - LocatableSeq object that stores sequence as files in the tempdir
- Bio::Seq::EncodedSeq - subtype of Bio::LocatableSeq to store DNA that encodes a protein
- 16 more results from BioPerl »
FAST::Bio::LocatableSeq - A FAST::Bio::PrimarySeq object with start/end points on it that can be projected into a MSA or have coordinates relative to another seq.
The LocatableSeq sequence object was developed mainly because the SimpleAlign object requires this functionality, and in the rewrite of the Sequence object we had to decide what to do with this. It is, to be honest, not well integrated with the rest ...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC - Search in distribution- FAST::Bio::Seq::LargeLocatableSeq - LocatableSeq object that stores sequence as files in the tempdir
- FAST::Bio::AlignIO - Handler for AlignIO Formats
- FAST::Bio::Align::AlignI - An interface for describing sequence alignments.
- 8 more results from FAST »
Tutorial - Hands-on tutorial for using Bio::NEXUS module.
Tutorial to get started using Bio::NEXUS module. INTRODUCTION The NEXUS file format standard of Maddison, et al. (1997) is designed to represent sets of data, including character data (e.g., molecular sequence alignments, morphological character sets...
ARLIN/Bio-NEXUS-0.78 - 10 Feb 2012 13:31:13 UTC - Search in distribution
Bio::DB::TFBS - Access to a Transcription Factor Binding Site database
This is a front end module for access to a Transcription Factor Binding Site database....
CJFIELDS/Bio-DB-TFBS-1.7.3 - 25 Sep 2018 00:20:12 UTC - Search in distribution
Bio::Grep::SearchResult - Data structure for a back-end search hit
Bio::Grep::SearchResult is the data structure for one hit in the database....
LIMAONE/Bio-Grep-v0.10.6 - 12 Nov 2009 20:01:33 UTC - Search in distribution
Bio::SeqFeature::Annotated - PLEASE PUT SOMETHING HERE
None yet, complain to authors....
CJFIELDS/Bio-FeatureIO-1.6.905 - 05 Sep 2014 17:34:58 UTC - Search in distribution