Search results for "Bio::Location"
Bio::Location::Fuzzy - Implementation of a Location on a Sequence which has unclear start and/or end locations
This module contains the necessary methods for representing a Fuzzy Location, one that does not have clear start and/or end points. This will initially serve to handle features from Genbank/EMBL feature tables that are written as 1^100 meaning betwee...
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC - Search in distribution- Bio::Location::Split - Implementation of a Location on a Sequence which has multiple locations (start/end points)
- Bio::Location::Atomic - Implementation of a Atomic Location on a Sequence
- Bio::Location::Simple - Implementation of a Simple Location on a Sequence
- 70 more results from BioPerl »
FAST::Bio::Location::Split - Implementation of a Location on a Sequence which has multiple locations (start/end points)
This implementation handles locations which span more than one start/end location, or and/or lie on different sequences, and can work with split locations that depend on the specific order of the sublocations ('join') or don't have a specific order b...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC - Search in distribution- FAST::Bio::Location::Fuzzy - Implementation of a Location on a Sequence which has unclear start and/or end locations
- FAST::Bio::Location::Simple - Implementation of a Simple Location on a Sequence
- FAST::Bio::Location::Atomic - Implementation of a Atomic Location on a Sequence
- 44 more results from FAST »
Bio::Palantir::Parser::Location - BiosynML DTD-derived internal class
# TODO...
LMEUNIER/Bio-Palantir-0.211420 - 22 May 2021 20:37:07 UTC - Search in distribution- Bio::Palantir::Parser::Gene - BiosynML DTD-derived internal class
- Bio::Palantir::Parser::Motif - BiosynML DTD-derived internal class
- Bio::Palantir::Parser::Cluster - BiosynML DTD-derived internal class
- 1 more result from Bio-Palantir »
Bio::DB::BioSQL::LocationAdaptor - DESCRIPTION of Object
Describe the object here...
CJFIELDS/BioPerl-DB-1.006900 - 15 Apr 2011 19:35:57 UTC - Search in distribution- Bio::DB::BioSQL::ReferenceAdaptor - DESCRIPTION of Object
- Bio::DB::BioSQL::SeqFeatureAdaptor - DESCRIPTION of Object
Bio::MAGE::DesignElement::FeatureLocation - Class for the MAGE-OM API
From the MAGE-OM documentation for the "FeatureLocation" class: Specifies where a feature is located relative to a grid....
JASONS/Bio-MAGE-20030502.3 - 14 May 2007 10:56:09 UTC - Search in distribution- Bio::MAGE::BioSequence::SeqFeatureLocation - Class for the MAGE-OM API
- Bio::MAGE::BioAssay::Image - Class for the MAGE-OM API
- Bio::MAGE::ArrayDesign::Zone - Class for the MAGE-OM API
- 11 more results from Bio-MAGE »
perlop - Perl operators and precedence
In Perl, the operator determines what operation is performed, independent of the type of the operands. For example "$x + $y" is always a numeric addition, and if $x or $y do not contain numbers, an attempt is made to convert them to numbers first. Th...
RJBS/perl-5.36.0 - 28 May 2022 00:26:10 UTC - Search in distribution- perlop - Perl operators and precedence
Data::Edit::Xml - Edit data held in the XML format.
Edit data held in the XML format. Version 20201031. The following sections describe the methods in each functional area of this module. For an alphabetic listing of all methods by name see Index....
PRBRENAN/Data-Edit-Xml-20201031 - 31 Oct 2020 23:42:40 UTC - Search in distribution
data2wig.pl - A program to convert a generic data file into a wig file.
This program will convert any tab-delimited data text file into a wiggle formatted text file. This requires that the file contains not only the scores bu also chromosomal coordinates, i.e. chromosome, start, and (optionally) stop. The program should ...
TJPARNELL/Bio-ToolBox-1.691 - 13 Oct 2022 18:07:52 UTC - Search in distribution- Bio::ToolBox::db_helper - helper interface to various database formats
- Bio::ToolBox::SeqFeature - Fast, simple SeqFeature implementation
- Bio::ToolBox::db_helper::config
- 1 more result from Bio-ToolBox »
WWW::Myspace - Access MySpace.com profile information from Perl
STEVENC/WWW-Myspace-0.92
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29 Jan 2009 13:45:39 UTC
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cipresrun - command line interface to the CIPRES analysis portal
RVOSA/Bio-Phylo-CIPRES-v0.2.1
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17 Apr 2020 22:55:30 UTC
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- Bio::Phylo::CIPRES - Reusable components for CIPRES REST API access
bp_biblio - bioperl client for accessing and querying a bibliographic repository
A client showing how to use Bio::Biblio module, a module for accessing and querying a bibliographic repository. It also shows how to use modules Bio::Biblio::IO::medlinexml Bio::Biblio::IO::medline2ref which converts XML MEDLINE citations into a simp...
CDRAUG/Bio-Biblio-1.70 - 24 Mar 2013 00:19:52 UTC - Search in distribution- Bio::Biblio - a bibliographic query service module
- Bio::DB::Biblio::soap - a SOAP-based access to a bibliographic query service
- Bio::DB::Biblio::biofetch - a BioFetch-based access to a bibliographic citation retrieval
Data::SeaBASS - Object-oriented interface for reading/writing SeaBASS files
"Data::SeaBASS" provides an easy to use, object-oriented interface for reading, writing, and modifying SeaBASS data files. What is SeaBASS? SeaWiFS <http://oceancolor.gsfc.nasa.gov> Bio-optical Archive and Storage System housed at Goddard Space Fligh...
JLEFLER/Data-SeaBASS-0.192600 - 17 Sep 2019 16:38:49 UTC - Search in distribution
Boulder::Genbank - Fetch Genbank data records as parsed Boulder Stones
Boulder::Genbank provides retrieval and parsing services for NCBI Genbank-format records. It returns Genbank entries in Stone format, allowing easy access to the various fields and values. Boulder::Genbank is a descendent of Boulder::Stream, and prov...
LDS/Boulder-1.30 - 14 Dec 2002 02:06:29 UTC - Search in distribution
WWW::Autosite - support subroutines for autosite handlers, router, and misc cgi scripts
Support subroutines for building cgi with HTML::Template....
LEOCHARRE/WWW-Autosite-1.08 - 27 Mar 2007 22:45:10 UTC - Search in distribution
Tesla::Vehicle - Access information and command Tesla automobiles via the API
This distribution provides methods for accessing and updating aspects of your Tesla vehicle. Not all attributes available through Tesla's API have methods listed here yet, but more will be added as time goes on. To access attributes that we don't hav...
STEVEB/Tesla-Vehicle-0.08 - 18 Jul 2022 19:05:30 UTC - Search in distribution
megatree-pruner - Given a list of taxa, returns subtree from a database
This program produces the subtree of the set of taxa provided as input from a previously produced database. As such, the functionality is roughly similar to extracting the 'common tree' from the NCBI taxonomy, which is a common operation in phylogeno...
RVOSA/Bio-Phylo-Forest-DBTree-v0.1.2 - 24 Oct 2017 14:06:26 UTC - Search in distribution- megatree-loader - Loads a Newick tree into a database or a spreadsheet
- megatree-ncbi-loader - Loads the NCBI taxonomy dump into a database
- megatree-phylotree-loader - Loads a tree in the format of PhyloTree.org
- 1 more result from Bio-Phylo-Forest-DBTree »
WWW::Formspring - Perl interface for formspring.me
This is a Perl interface for the very beta formspring.me API. This module is subject to breakage as they play with the final spec of their API. Most methods share names with the paths of the API counterparts, making the formspring API documentation o...
WORR/WWW-Formspring-0.03 - 06 Oct 2010 15:14:01 UTC - Search in distribution
Bio::Trace::ABIF - Perl extension for reading and parsing ABIF (Applied Biosystems, Inc. Format) files
VITA/Bio-Trace-ABIF-1.06
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02 Nov 2016 11:16:32 UTC
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pod::INSTALL
LDS/GBrowse-2.56
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15 Jan 2017 21:29:11 UTC
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- pod::GENBANK_HOWTO
- pod::CONFIGURE_HOWTO
- Bio::Graphics::Browser::Plugin - Base class for gbrowse plugins.
- 3 more results from GBrowse »