Search results for "Bio::Location::Split"
Bio::Location::Split - Implementation of a Location on a Sequence which has multiple locations (start/end points)
This implementation handles locations which span more than one start/end location, or and/or lie on different sequences, and can work with split locations that depend on the specific order of the sublocations ('join') or don't have a specific order b...
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC - Search in distribution- Bio::Location::SplitLocationI - Abstract interface of a Location on a Sequence which has multiple locations (start/end points)
- Bio::Seq - Sequence object, with features
- bp_genbank2gff3.pl - Genbank-gtgbrowse-friendly GFF3
- 7 more results from BioPerl »
FAST::Bio::Location::Split - Implementation of a Location on a Sequence which has multiple locations (start/end points)
This implementation handles locations which span more than one start/end location, or and/or lie on different sequences, and can work with split locations that depend on the specific order of the sublocations ('join') or don't have a specific order b...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC - Search in distribution- FAST::Bio::Location::SplitLocationI - Abstract interface of a Location on a Sequence which has multiple locations (start/end points)
- FAST::Bio::UnivAln - Bioperl alignment object
- FAST::Bio::Seq - Sequence object, with features
- 5 more results from FAST »
perlop - Perl operators and precedence
In Perl, the operator determines what operation is performed, independent of the type of the operands. For example "$x + $y" is always a numeric addition, and if $x or $y do not contain numbers, an attempt is made to convert them to numbers first. Th...
RJBS/perl-5.36.0 - 28 May 2022 00:26:10 UTC - Search in distribution- perlop - Perl operators and precedence
data2wig.pl - A program to convert a generic data file into a wig file.
This program will convert any tab-delimited data text file into a wiggle formatted text file. This requires that the file contains not only the scores bu also chromosomal coordinates, i.e. chromosome, start, and (optionally) stop. The program should ...
TJPARNELL/Bio-ToolBox-1.691 - 13 Oct 2022 18:07:52 UTC - Search in distribution- Bio::ToolBox::db_helper - helper interface to various database formats
Data::Edit::Xml - Edit data held in the XML format.
Edit data held in the XML format. Version 20201031. The following sections describe the methods in each functional area of this module. For an alphabetic listing of all methods by name see Index....
PRBRENAN/Data-Edit-Xml-20201031 - 31 Oct 2020 23:42:40 UTC - Search in distribution
Data::SeaBASS - Object-oriented interface for reading/writing SeaBASS files
"Data::SeaBASS" provides an easy to use, object-oriented interface for reading, writing, and modifying SeaBASS data files. What is SeaBASS? SeaWiFS <http://oceancolor.gsfc.nasa.gov> Bio-optical Archive and Storage System housed at Goddard Space Fligh...
JLEFLER/Data-SeaBASS-0.192600 - 17 Sep 2019 16:38:49 UTC - Search in distribution
Bio::DB::HTS - Read files using HTSlib including BAM/CRAM, Tabix and BCF database files
This module provides a Perl interface to the HTSlib library for indexed and unindexed SAM/BAM/CRAM sequence alignment databases. It provides support for retrieving information on individual alignments, read pairs, and alignment coverage information a...
AVULLO/Bio-DB-HTS-3.01 - 23 Apr 2019 13:51:11 UTC - Search in distribution
Bio::DB::Sam - Read SAM/BAM database files
This module provides a Perl interface to the libbam library for indexed and unindexed SAM/BAM sequence alignment databases. It provides support for retrieving information on individual alignments, read pairs, and alignment coverage information across...
LDS/Bio-SamTools-1.43 - 12 Feb 2016 19:33:32 UTC - Search in distribution
Bio::WGS2NCBI - module to assist in submitting whole genome sequencing projects to NCBI
This module documents the four actions (prepare, process, convert and compress) that are available to users of the wgs2ncbi script. Each of these steps is configured by one or more configuration files. In the documentation below, the relevant fields ...
RVOSA/Bio-WGS2NCBI-v0.1.2 - 23 Jan 2020 15:54:29 UTC - Search in distribution
lib/Bio/DB/BigBed.pm
This module provides a high-level interface to Jim Kent's BigBed files, a type of indexed genome feature database that can be randomly accessed across the network. Please see http://genome.ucsc.edu/FAQ/FAQformat.html for information about creating th...
LDS/Bio-BigFile-1.07 - 24 Feb 2012 17:20:46 UTC - Search in distribution
Alien::SeqAlignment::last - find, build and install the last tools
This distribution provides last so that it can be used by other Perl distributions that are on CPAN. The source code will be downloaded from the last Gitlab repo, and if that fails it will use the location of a fork by the author of this Perl module....
CHRISARG/Alien-SeqAlignment-last-0.02 - 24 Mar 2024 03:31:46 UTC - Search in distribution
Bio::Coordinate::Result - Results from coordinate transformation.
The results from Bio::Coordinate::MapperI are kept in an object which itself is a split location, See Bio::Location::Split. The results are either Matches or Gaps. See Bio::Coordinate::Result::Match and Bio::Coordinate::Result::Gap. If only one Match...
CJFIELDS/Bio-Coordinate-1.007001 - 15 Dec 2016 05:03:14 UTC - Search in distribution- Bio::Coordinate::Pair - Continuous match between two coordinate sets.
- Bio::Coordinate::Collection - Noncontinuous match between two coordinate sets.
- Bio::Coordinate::GeneMapper - Transformations between gene related coordinate systems.
- 1 more result from Bio-Coordinate »
AI::TensorFlow::Libtensorflow::Manual::Notebook::InferenceUsingTFHubEnformerGeneExprPredModel - Using TensorFlow to do gene expression prediction using a pre-trained model
ZMUGHAL/AI-TensorFlow-Libtensorflow-0.0.7
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05 Oct 2023 05:37:08 UTC
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Bio::Graphics::FeatureFile - A set of Bio::Graphics features, stored in a file
The Bio::Graphics::FeatureFile module reads and parses files that describe sequence features and their renderings. It accepts both GFF format and a more human-friendly file format described below. Once a FeatureFile object has been initialized, you c...
CJFIELDS/Bio-Graphics-2.40 - 16 Dec 2016 04:50:36 UTC - Search in distribution
Bio::DB::SeqFeature::Store::GFF2Loader - GFF2 file loader for Bio::DB::SeqFeature::Store
The Bio::DB::SeqFeature::Store::GFF2Loader object parsers GFF2-format sequence annotation files and loads Bio::DB::SeqFeature::Store databases. For certain combinations of SeqFeature classes and SeqFeature::Store databases it features a "fast load" m...
CJFIELDS/Bio-DB-SeqFeature-1.7.4 - 09 Jan 2020 04:03:49 UTC - Search in distribution- Bio::DB::SeqFeature::Store::GFF3Loader - GFF3 file loader for Bio::DB::SeqFeature::Store
- Bio::DB::SeqFeature::Store::FeatureFileLoader - feature file loader for Bio::DB::SeqFeature::Store