Search results for "Bio::Matrix::Scoring"
Bio::Matrix::Scoring - Object which can hold scoring matrix information
An object which can handle AA or NT scoring matrix information. Some transformation properties are available too....
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC - Search in distribution- Bio::Matrix::IO::scoring - A parser for PAM/BLOSUM matricies
- Bio::Matrix::IO - A factory for Matrix parsing
- Bio::Matrix::PSM::ProtMatrix - SiteMatrixI implementation, holds a position scoring matrix (or position weight matrix) with log-odds scoring information.
- 4 more results from BioPerl »
Bio::Tools::Run::StandAloneBlast - Object for the local execution of the NCBI BLAST program suite (blastall, blastpgp, bl2seq). There is experimental support for WU-Blast and NCBI rpsblast.
This DESCRIPTION only documents Bio::Tools::Run::StandAloneBlast, a Bioperl object for running the NCBI standAlone BLAST package. Blast itself is a large & complex program - for more information regarding BLAST, please see the BLAST documentation whi...
CJFIELDS/BioPerl-Run-1.007003 - 08 Feb 2019 19:55:33 UTC - Search in distribution- Bio::Tools::Run::StandAloneNCBIBlast - Object for the local execution of the NCBI BLAST program suite (blastall, blastpgp, bl2seq). With experimental support for NCBI rpsblast.
- Bio::Tools::Run::Alignment::Lagan - Object for the local execution of the LAGAN suite of tools (including MLAGAN for multiple sequence alignments)
Bio::Tools::Run::Alignment::TCoffee - Object for the calculation of a multiple sequence alignment from a set of unaligned sequences or alignments using the TCoffee program
Note: this DESCRIPTION only documents the (Bio)perl interface to TCoffee. Helping the module find your executable You will need to enable TCoffee to find the t_coffee program. This can be done in (at least) three ways: 1. Make sure the t_coffee execu...
CDRAUG/Bio-Tools-Run-Alignment-TCoffee-1.7.4 - 09 Jul 2018 18:31:30 UTC - Search in distribution
Bio::RNA::SpliceSites::Scoring::MaxEntScan - Perl module for pre-mRNA splice site scoring by the maxEntScan algorithm of Gene Yeo and Chris Burge.
This module scores 5' and 3' splice sites using the maxEntScan algorithm. See the original publication (citattion below) for details on the scoring algorithm. EXPORT None by default. The following two functions are available for export: score5 score3...
BRYKETOS/Bio-RNA-SpliceSites-Scoring-MaxEntScan-0.05 - 21 Mar 2015 19:26:48 UTC - Search in distribution