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Search results for "Bio::Root::Build"

Dash - Analytical Web Apps in Perl (Port of Plotly's Dash to Perl) River stage zero No dependents

This package is a port of Plotly's Dash <https://dash.plot.ly/> to Perl. Dash makes building analytical web applications very easy. No JavaScript required. It's a great way to put a nice interactive web interface to your data analysis application wit...

PABLROD/Dash-0.11 - 14 Aug 2022 14:02:57 UTC - Search in distribution

Data::Edit::Xml - Edit data held in the XML format. River stage one • 5 direct dependents • 6 total dependents

Edit data held in the XML format. Version 20201031. The following sections describe the methods in each functional area of this module. For an alphabetic listing of all methods by name see Index....

PRBRENAN/Data-Edit-Xml-20201031 - 31 Oct 2020 23:42:40 UTC - Search in distribution

Net::SSLeay - Perl bindings for OpenSSL and LibreSSL River stage four • 166 direct dependents • 2151 total dependents

This module provides Perl bindings for libssl (an SSL/TLS API) and libcrypto (a cryptography API)....

CHRISN/Net-SSLeay-1.94 - 08 Jan 2024 01:22:27 UTC - Search in distribution

GO::Parser - parses all GO files formats and types River stage one • 1 direct dependent • 1 total dependent

Module for parsing GO flat files; for examples of GO/OBO flatfile formats see: <ftp://ftp.geneontology.org/pub/go/ontology> <ftp://ftp.geneontology.org/pub/go/gene-associations> For a description of the various file formats, see: <http://www.geneonto...

CMUNGALL/go-perl-0.15 - 12 Jun 2013 16:22:41 UTC - Search in distribution

GO::AppHandle - Gene Ontology Data API handle River stage zero No dependents

This is a module for accessing Gene Ontology data sources, e.g the GO relational database. It defines a set of methods that provide a consistent interface independent of the way the GO data is stored. For an explanation of the GO project, please visi...

SJCARBON/go-db-perl-0.04 - 21 Dec 2009 21:56:44 UTC - Search in distribution

pod::INSTALL River stage zero No dependents

LDS/GBrowse-2.56 - 15 Jan 2017 21:29:11 UTC - Search in distribution

MOBY::CommonSubs - a set of exportable subroutines that are useful in clients and services to deal with the input/output from MOBY Services River stage one • 1 direct dependent • 1 total dependent

CommonSubs are used to do various manipulations of MOBY service-invocation and response messages. It is useful both Client and Service side and will ensure that the message structure is valid as per the latest version of the MOBY API. It DOES NOT con...

EKAWAS/MOBY-1.16 - 29 Mar 2015 13:34:52 UTC - Search in distribution

Bio::SeqIO - Handler for SeqIO Formats River stage two • 60 direct dependents • 65 total dependents

Bio::SeqIO is a handler module for the formats in the SeqIO set (eg, Bio::SeqIO::fasta). It is the officially sanctioned way of getting at the format objects, which most people should use. The Bio::SeqIO system can be thought of like biological file ...

CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC - Search in distribution

Webservice::InterMine - modules for interacting with InterMine datawarehouse webservices River stage one • 1 direct dependent • 1 total dependent

This distribution is the client interface to any implementation of the InterMine Datawarehousing WebService (www.intermine.org). Primarily used for biological genomic databases, the webservice allows the user to easily write and execute structured qu...

INTERMINE/Webservice-InterMine-1.0405 - 12 Dec 2013 23:14:03 UTC - Search in distribution

FAST::Bio::Tree::NodeI - Interface describing a Tree Node River stage zero No dependents

A NodeI is capable of the basic structure of building a tree and storing the branch length between nodes. The branch length is the length of the branch between the node and its ancestor, thus a root node in a Tree will not typically have a valid bran...

DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC - Search in distribution

Bio::Community::IO - Read and write files that describe communities River stage zero No dependents

A Bio::Community::IO object implement methods to read and write communities in formats used by popular programs such as BIOM, GAAS, QIIME, Unifrac, or as generic tab-separated tables. The format should be automatically detected though it can be manua...

FANGLY/Bio-Community-0.001008 - 08 Jan 2016 20:06:45 UTC - Search in distribution

Bio::Tools::Run::Alignment::TCoffee - Object for the calculation of a multiple sequence alignment from a set of unaligned sequences or alignments using the TCoffee program River stage zero No dependents

Note: this DESCRIPTION only documents the (Bio)perl interface to TCoffee. Helping the module find your executable You will need to enable TCoffee to find the t_coffee program. This can be done in (at least) three ways: 1. Make sure the t_coffee execu...

CDRAUG/Bio-Tools-Run-Alignment-TCoffee-1.7.4 - 09 Jul 2018 18:31:30 UTC - Search in distribution

Bio::Polloc::Genome - A group of sequences from the same organism River stage zero No dependents

LRR/Polloc-1.5.3b - 29 Jun 2011 02:32:21 UTC - Search in distribution

Bio::DB::Query::DBQueryResult - DESCRIPTION of Object River stage zero No dependents

This modules provides an implementation of Bio::DB::Query::QueryResultI for database queries through DBI....

CJFIELDS/BioPerl-DB-1.006900 - 15 Apr 2011 19:35:57 UTC - Search in distribution

Bio::Search::Hit::HmmpfamHit - A parser and hit object for hmmpfam hits River stage zero No dependents

This object implements a parser for hmmpfam hit output, a program in the HMMER package....

CJFIELDS/Bio-SearchIO-hmmer-1.7.3 - 25 Sep 2018 00:26:52 UTC - Search in distribution

Bio::Tools::Run::Phylo::Raxml River stage one • 2 direct dependents • 2 total dependents

Get a Bio::Tree object using raxml given a protein or DNA alignment....

CJFIELDS/BioPerl-Run-1.007003 - 08 Feb 2019 19:55:33 UTC - Search in distribution

Bio::Grep::Backend::BackendI - Superclass for all back-ends River stage zero No dependents

Bio::Grep::Backend::BackendI is the superclass for all back-ends. Don't use this class directly....

LIMAONE/Bio-Grep-v0.10.6 - 12 Nov 2009 20:01:33 UTC - Search in distribution

Bio::Coordinate::Utils - Additional methods to create Bio::Coordinate objects. River stage one • 1 direct dependent • 3 total dependents

This class is a holder of methods that work on or create Bio::Coordinate::MapperI- compliant objects. . These methods are not part of the Bio::Coordinate::MapperI interface and should in general not be essential to the primary function of sequence ob...

CJFIELDS/Bio-Coordinate-1.007001 - 15 Dec 2016 05:03:14 UTC - Search in distribution
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