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Search results for "Bio::Root::Root"

Bio::Root::Root - implementation of Bio::Root::RootI interface River stage two • 60 direct dependents • 65 total dependents

This is a hashref-based implementation of the Bio::Root::RootI interface. Most Bioperl objects should inherit from this. See the documentation for Bio::Root::RootI for most of the methods implemented by this module. Only overridden methods are descri...

CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC - Search in distribution

lib/FAST/Bio/Root/Root.pm River stage zero No dependents

This is a hashref-based implementation of the FAST::Bio::Root::RootI interface. Most Bioperl objects should inherit from this. See the documentation for FAST::Bio::Root::RootI for most of the methods implemented by this module. Only overridden method...

DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC - Search in distribution

Bio::Grep::Root - Superclass for all Bio::Grep* packages River stage zero No dependents

This superclass adds some useful methods to all Bio::Grep packages....

LIMAONE/Bio-Grep-v0.10.6 - 12 Nov 2009 20:01:33 UTC - Search in distribution

Bio::Chaos::Root - root utility class for chaos objects River stage zero No dependents

Root class for chaos objects this class inherits from Bio::Root::Root, so you get all that juicy stuff too INHERITANCE Bio::Root::Root...

CMUNGALL/Bio-Chaos-0.02 - 02 Sep 2005 18:47:08 UTC - Search in distribution

Bio::Polloc::Polloc::Root - Perl library for Polymorphic Loci Analyses River stage zero No dependents

LRR/Polloc-1.5.3b - 29 Jun 2011 02:32:21 UTC - Search in distribution

Bio::Palantir::Parser::Root - BiosynML DTD-derived internal class River stage zero No dependents

# TODO...

LMEUNIER/Bio-Palantir-0.211420 - 22 May 2021 20:37:07 UTC - Search in distribution
  • Bio::Palantir - core classes and utilities for Bio::Palantir
  • Bio::Palantir::Parser - front-end class for Bio::Palantir::Parser module, wich handles the parsing of biosynML.xml and regions.js antiSMASH reports
  • Bio::Palantir::Refiner - front-end class for Bio::Palantir::Refiner module, wich handles the refinement of NRPS/PKS BGC annotations

Bio::Chado::Schema::Result::Cv::CvRoot River stage one • 3 direct dependents • 3 total dependents

the roots of a cv are the set of terms which have no parents (terms that are not the subject of a relation). Most cvs will have a single root, some may have >1. All will have at least 1...

RBUELS/Bio-Chado-Schema-0.20000 - 06 Jul 2012 19:06:31 UTC - Search in distribution

lib/Bio/ConnectDots/ConnectorQuery/Operator/CsRootConstraint.pm River stage zero No dependents

DBURDICK/Bio-ConnectDots-1.0.2 - 07 Apr 2005 22:06:44 UTC - Search in distribution

Installation - Bio::NEXUS Installation Instructions. River stage one • 1 direct dependent • 1 total dependent

How to install Bio::NEXUS Perl module....

ARLIN/Bio-NEXUS-0.78 - 10 Feb 2012 13:31:13 UTC - Search in distribution

Dash - Analytical Web Apps in Perl (Port of Plotly's Dash to Perl) River stage zero No dependents

This package is a port of Plotly's Dash <https://dash.plot.ly/> to Perl. Dash makes building analytical web applications very easy. No JavaScript required. It's a great way to put a nice interactive web interface to your data analysis application wit...

PABLROD/Dash-0.11 - 14 Aug 2022 14:02:57 UTC - Search in distribution

WWW::Myspace - Access MySpace.com profile information from Perl River stage zero No dependents

STEVENC/WWW-Myspace-0.92 - 29 Jan 2009 13:45:39 UTC - Search in distribution

go2fmt.pl River stage one • 1 direct dependent • 1 total dependent

parses any GO/OBO style ontology file and writes out as a different format ARGUMENTS -e ERRFILE writes parse errors in XML - defaults to STDERR (there should be no parse errors in well formed files) -p FORMAT determines which parser to use; if left u...

CMUNGALL/go-perl-0.15 - 12 Jun 2013 16:22:41 UTC - Search in distribution
  • go-perl - perl modules for GO and other OBO ontologies
  • GO::Parser - parses all GO files formats and types

HackaMol - HackaMol: Object-Oriented Library for Molecular Hacking River stage one • 3 direct dependents • 3 total dependents

The HackaMol publication <http://pubs.acs.org/doi/abs/10.1021/ci500359e> has a more complete description of the library (pdf available from researchgate <http://www.researchgate.net/profile/Demian_Riccardi/publication/2737781 91_HackaMol_an_object-or...

DEMIAN/HackaMol-0.053 - 23 Feb 2022 00:55:44 UTC - Search in distribution

CGI::WebToolkit - Website Toolkit River stage zero No dependents

CGI::WebToolkit tries to simplify the common tasks when creating dynamic websites. The use of CGI::WebToolkit should lead to the development of easy to understand, relieable and fast dynamic web applications that are easy to adjust and maintain. CGI:...

KITOMER/CGI-WebToolkit-0.08 - 14 Oct 2010 07:21:29 UTC - Search in distribution

biotree - Tree manipulations based on BioPerl River stage zero No dependents

Designed as a UNIX-like utility, biotree reads a tree file and reformats branches and nodes based on these BioPerl modules: Bio::TreeIO, Bio::Tree::Tree, Bio::Tree::Node, and Bio::Tree::TreeFunctionsI. Trees can be in any format supported by Bio::Tre...

YZHERNAND/Bio-BPWrapper-1.15 - 27 Feb 2024 16:55:31 UTC - Search in distribution

Data::Edit::Xml - Edit data held in the XML format. River stage one • 5 direct dependents • 6 total dependents

Edit data held in the XML format. Version 20201031. The following sections describe the methods in each functional area of this module. For an alphabetic listing of all methods by name see Index....

PRBRENAN/Data-Edit-Xml-20201031 - 31 Oct 2020 23:42:40 UTC - Search in distribution

Net::SSLeay - Perl bindings for OpenSSL and LibreSSL River stage four • 166 direct dependents • 2151 total dependents

This module provides Perl bindings for libssl (an SSL/TLS API) and libcrypto (a cryptography API)....

CHRISN/Net-SSLeay-1.94 - 08 Jan 2024 01:22:27 UTC - Search in distribution

load_ontology.pl River stage zero No dependents

This script loads a BioSQL database with an ontology. There are a number of options to do with where the BioSQL database is (ie, hostname, user for database, password, database name) followed by the database name you wish to load this into and then a...

CJFIELDS/BioPerl-DB-1.006900 - 15 Apr 2011 19:35:57 UTC - Search in distribution

Alvis::NLPPlatform - Perl extension for linguistically annotating XML documents in Alvis River stage zero No dependents

This module is the main part of the Alvis NLP platform. It provides overall methods for the linguistic annotation of web documents. Linguistic annotations depend on the configuration variables and dependencies between linguistic steps. Input document...

THHAMON/Alvis-NLPPlatform-0.6 - 16 Apr 2008 17:19:55 UTC - Search in distribution

pod::INSTALL River stage zero No dependents

LDS/GBrowse-2.56 - 15 Jan 2017 21:29:11 UTC - Search in distribution
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