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Search results for "Bio::SamTools"

Bio::Tradis::Samtools - Change samtools syntax depending on version found River stage zero No dependents

AJPAGE/Bio-Tradis-1.4.5 - 04 Dec 2019 14:41:26 UTC - Search in distribution

Bio::Tools::Run::Samtools - a run wrapper for the samtools suite *BETA* River stage one • 2 direct dependents • 2 total dependents

This is a wrapper for running samtools, a suite of large-alignment reading and manipulation programs available at <http://samtools.sourceforge.net/>....

CJFIELDS/BioPerl-Run-1.007003 - 08 Feb 2019 19:55:33 UTC - Search in distribution

Bio::DB::Sam - Read SAM/BAM database files River stage zero No dependents

This module provides a Perl interface to the libbam library for indexed and unindexed SAM/BAM sequence alignment databases. It provides support for retrieving information on individual alignments, read pairs, and alignment coverage information across...

LDS/Bio-SamTools-1.43 - 12 Feb 2016 19:33:32 UTC - Search in distribution

Alien::SamTools - Fetch/build/stash the SamTools headers and libs. River stage zero No dependents

Download, build, and install the SamTools C headers and libraries into a well-known location, "File::ShareDir::dist_dir('Alien-SamTools')", from whence other packages can make use of them. It currently installs samtools-0.1.19.tar.bz2 <http://colocro...

HARTZELL/Alien-SamTools-0.002 - 17 Dec 2015 19:35:11 UTC - Search in distribution

fromsam River stage zero No dependents

TSIBLEY/App-RecordStream-Bio-0.24 - 04 Aug 2017 17:45:08 UTC - Search in distribution

Bio::HTS - XS module providing an interface to htslib River stage zero No dependents

The beginnings of an XS wrapper around the many useful methods in htslib. All the other perl modules use the old samtools or aren't on cpan. So far only Tabix is supported. Contributions welcome on github: <http://www.github.com/congenica/perl_htslib...

NYET/Bio-HTS-v0.0.1 - 11 Jan 2016 11:58:54 UTC - Search in distribution

Bio::DB::HTS - Read files using HTSlib including BAM/CRAM, Tabix and BCF database files River stage one • 1 direct dependent • 1 total dependent

This module provides a Perl interface to the HTSlib library for indexed and unindexed SAM/BAM/CRAM sequence alignment databases. It provides support for retrieving information on individual alignments, read pairs, and alignment coverage information a...

AVULLO/Bio-DB-HTS-3.01 - 23 Apr 2019 13:51:11 UTC - Search in distribution

Bio::ViennaNGS - A Perl distribution for Next-Generation Sequencing (NGS) data analysis River stage zero No dependents

Bio::ViennaNGS is a distribution of Perl modules and utilities for building efficient Next-Generation Sequencing (NGS) analysis pipelines. It covers various aspects of NGS data analysis, including (but not limited to) conversion of sequence annotatio...

MTW/Bio-ViennaNGS-v0.19.2 - 11 Dec 2018 13:25:00 UTC - Search in distribution

CracTools::Utils - A set of useful functions River stage one • 1 direct dependent • 1 total dependent

Bio::Lite is a set of subroutines that aims to answer similar questions as Bio-perl distribution in a FAST and SIMPLE way. Bio::Lite does not make use of complexe data struture, or objects, that would lead to a slow execution. All methods can be impo...

JAUDOUX/CracTools-1.251 - 09 Jun 2017 15:29:56 UTC - Search in distribution

lib/Bio/DB/BigBed.pm River stage zero No dependents

This module provides a high-level interface to Jim Kent's BigBed files, a type of indexed genome feature database that can be randomly accessed across the network. Please see http://genome.ucsc.edu/FAQ/FAQformat.html for information about creating th...

LDS/Bio-BigFile-1.07 - 24 Feb 2012 17:20:46 UTC - Search in distribution

Bio::ToolBox::db_helper - helper interface to various database formats River stage zero No dependents

In most cases, this module does not need to be used directly. The methods available to Bio::ToolBox::Data and Bio::ToolBox::Data::Feature provide convenient access to the methods described here. These are helper subroutines to work with relevant data...

TJPARNELL/Bio-ToolBox-1.691 - 13 Oct 2022 18:07:52 UTC - Search in distribution

Bio::Tools::Run::WrapperBase - Extensions to WrapperBase for handling programs with commands *ALPHA* River stage two • 60 direct dependents • 65 total dependents

This is a developer-focused experimental module. The main idea is to extend Bio::Tools::Run::WrapperBase to make it relatively easy to create run wrappers around *suites* of related programs, like "samtools" or "blast+". Some definitions: * program T...

CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC - Search in distribution

AI::TensorFlow::Libtensorflow::Manual::Notebook::InferenceUsingTFHubEnformerGeneExprPredModel - Using TensorFlow to do gene expression prediction using a pre-trained model River stage zero No dependents

ZMUGHAL/AI-TensorFlow-Libtensorflow-0.0.7 - 05 Oct 2023 05:37:08 UTC - Search in distribution
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