Search results for "Bio::SearchIO::blastxml"
Bio::SearchIO::blastxml - A SearchIO implementation of NCBI Blast XML parsing.
This object implements a NCBI Blast XML parser. It requires XML::SAX; it is also recommended (for faster parsing) that XML::SAX::ExpatXS or XML::LibXML be installed. Either 'XML::SAX::ExpatXS' or 'XML::LibXML::SAX::Parser' should be set as the defaul...
CJFIELDS/Bio-SearchIO-blastxml-1.70 - 04 Jan 2018 02:12:33 UTC - Search in distribution- Bio::SearchIO::XML::BlastHandler - XML Handler for NCBI Blast XML parsing.
- Bio::SearchIO::XML::PsiBlastHandler - XML Handler for NCBI Blast PSIBLAST XML parsing.
FAST::Bio::SearchIO::blastxml - A SearchIO implementation of NCBI Blast XML parsing.
This object implements a NCBI Blast XML parser. It requires XML::SAX; it is also recommended (for faster parsing) that XML::SAX::ExpatXS or XML::LibXML be installed. Either 'XML::SAX::ExpatXS' or 'XML::LibXML::SAX::Parser' should be set as the defaul...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC - Search in distribution- FAST::Bio::SearchIO - Driver for parsing Sequence Database Searches (BLAST, FASTA, ...)
- FAST::Bio::SearchIO::blast - Event generator for event based parsing of blast reports
- FAST::Bio::SearchIO::XML::BlastHandler - XML Handler for NCBI Blast XML parsing.
- 1 more result from FAST »
Bio::SearchIO - Driver for parsing Sequence Database Searches (BLAST, FASTA, ...)
This is a driver for instantiating a parser for report files from sequence database searches. This object serves as a wrapper for the format parsers in Bio::SearchIO::* - you should not need to ever use those format parsers directly. (For people used...
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC - Search in distribution- Bio::SearchIO::blast - Event generator for event based parsing of blast reports
- bp_search2alnblocks - Turn SearchIO parseable reports(s) into a set of aligned blocks