Search results for "Bio::Seq::LargePrimarySeq"
Bio::Seq::LargePrimarySeq - PrimarySeq object that stores sequence as files in the tempdir (as found by File::Temp) or the default method in Bio::Root::Root
This object stores a sequence as a series of files in a temporary directory. The aim is to allow someone the ability to store very large sequences (eg, > 100MBases) in a file system without running out of memory (eg, on a 64 MB real memory machine!)....
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC - Search in distribution- Bio::Seq::LargeSeq - SeqI compliant object that stores sequence as files in /tmp
- Bio::SeqIO::largefasta - method i/o on very large fasta sequence files
FAST::Bio::Seq::LargePrimarySeq - PrimarySeq object that stores sequence as files in the tempdir (as found by File::Temp) or the default method in FAST::Bio::Root::Root
This object stores a sequence as a series of files in a temporary directory. The aim is to allow someone the ability to store very large sequences (eg, > 100MBases) in a file system without running out of memory (eg, on a 64 MB real memory machine!)....
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC - Search in distribution- FAST::Bio::SeqIO::largefasta - method i/o on very large fasta sequence files
Bio::BLAST::Database::Seq - lazy-loading sequence from a BLAST database
Implements all methods in Bio::PrimarySeqI. Lazily loads its sequence information from the BLAST database it comes from, meaning that the sequence information is not actually loaded until you ask for it. Uses Bio::Seq::LargePrimarySeq internally when...
RBUELS/Bio-BLAST-0.4 - 12 Sep 2011 15:47:19 UTC - Search in distribution