Search results for "Bio::SeqIO::entrezgene"
Bio::SeqIO::entrezgene - Entrez Gene ASN1 parser
This is EntrezGene ASN bioperl parser. It is built on top of Bio::ASN1::EntrezGene, a low level ASN parser built by Mingyi Liu (<http://sourceforge.net/projects/egparser>). The easiest way to use it is shown above. You will get most of the Entrez Gen...
CJFIELDS/Bio-ASN1-EntrezGene-1.73 - 25 Sep 2018 02:32:11 UTC - Search in distribution- Bio::ASN1::Sequence::Indexer - Indexes NCBI Sequence files.
- Bio::ASN1::EntrezGene::Indexer - Indexes NCBI Sequence files.
FAST::Bio::SeqIO::entrezgene - Entrez Gene ASN1 parser
This is EntrezGene ASN bioperl parser. It is built on top of FAST::Bio::ASN1::EntrezGene, a low level ASN parser built by Mingyi Liu (<http://sourceforge.net/projects/egparser>). The easiest way to use it is shown above. You will get most of the Entr...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC - Search in distribution
bp_genbank2gff3.pl - Genbank-gtgbrowse-friendly GFF3
This script uses Bio::SeqFeature::Tools::Unflattener and Bio::Tools::GFF to convert GenBank flatfiles to GFF3 with gene containment hierarchies mapped for optimal display in gbrowse. The input files are assumed to be gzipped GenBank flatfiles for ref...
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC - Search in distribution
Bio::DB::EntrezGene - Database object interface to Entrez Gene
Allows the dynamic retrieval of Sequence objects from the Entrez Gene database at NCBI, via an Entrez query using Gene ids. This module requires the CPAN Bio::ASN1 module. WARNING: Please do NOT spam the Entrez web server with multiple requests. NCBI...
CJFIELDS/Bio-DB-NCBIHelper-1.7.8 - 15 Dec 2023 04:25:18 UTC - Search in distribution