Search results for "Bio::SeqIO::fastq"
Bio::SeqIO::fastq - fastq sequence input/output stream
This object can transform Bio::Seq and Bio::Seq::Quality objects to and from FASTQ flat file databases. FASTQ is a file format used frequently at the Sanger Centre and in next-gen sequencing to bundle a FASTA sequence and its quality data. A typical ...
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC - Search in distribution- Bio::SeqIO - Handler for SeqIO Formats
- Bio::Index::Fastq - Interface for indexing (multiple) fastq files
- Bio::Tools::GuessSeqFormat - Module for determining the sequence format of the contents of a file, a string, or through a filehandle.
FAST::Bio::SeqIO::fastq - fastq sequence input/output stream
This object can transform FAST::Bio::Seq and FAST::Bio::Seq::Quality objects to and from FASTQ flat file databases. FASTQ is a file format used frequently at the Sanger Centre and in next-gen sequencing to bundle a FASTA sequence and its quality data...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC - Search in distribution- FAST::Bio::SeqIO - Handler for SeqIO Formats
- FAST::Bio::Tools::GuessSeqFormat - Module for determining the sequence format of the contents of a file, a string, or through a filehandle.
lib/Bio/Gonzales/Seq/IO/fastq.pm
JWB/Bio-Gonzales-0.083
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02 Jan 2021 23:10:48 UTC
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Bio::Lite - Lightweight and fast module with a simplified API to ease scripting in bioinformatics
Bio::Lite is a set of subroutines that aims to answer similar questions as Bio-perl distribution in a FAST and SIMPLE way. Bio::Lite does not make use of complexe data struture, or objects, that would lead to a slow execution. All methods can be impo...
JAUDOUX/Bio-Lite-0.003 - 23 Jul 2014 16:15:45 UTC - Search in distribution
bioseq - Manipulation of FASTA sequences based on BioPerl
bioseq is a command-line utility for common, routine sequence manipulations based on BioPerl modules including Bio::Seq, Bio::SeqIO, Bio::SeqUtils, and Bio::Tools::SeqStats. By default, bioseq assumes that both the input and the output files are in F...
YZHERNAND/Bio-BPWrapper-1.15 - 27 Feb 2024 16:55:31 UTC - Search in distribution
Bio::Kmer - Helper module for Kmer Analysis.
A module for helping with kmer analysis. The basic methods help count kmers and can produce a count of counts. Currently this module only supports fastq format. Although this module can count kmers with pure perl, it is recommended to give the option...
LSKATZ/Bio-Kmer-0.55 - 26 Apr 2024 00:15:35 UTC - Search in distribution
Task::FASTQTools
A collection of tools to convert, filter and analyze FASTQ files....
CHRISARG/Task-FASTQTools-0.01 - 30 Sep 2023 00:53:30 UTC - Search in distribution
CracTools::Utils - A set of useful functions
Bio::Lite is a set of subroutines that aims to answer similar questions as Bio-perl distribution in a FAST and SIMPLE way. Bio::Lite does not make use of complexe data struture, or objects, that would lead to a slow execution. All methods can be impo...
JAUDOUX/CracTools-1.251 - 09 Jun 2017 15:29:56 UTC - Search in distribution