Search results for "Bio::SeqIO::table"
Bio::SeqIO::table - sequence input/output stream from a delimited table
This class transforms records in a table-formatted text file into Bio::Seq objects. A table-formatted text file of sequence records for the purposes of this module is defined as a text file with each row corresponding to a sequence, and the attribute...
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC - Search in distribution- Bio::SeqIO - Handler for SeqIO Formats
- Bio::Seq - Sequence object, with features
- Bio::SearchIO - Driver for parsing Sequence Database Searches (BLAST, FASTA, ...)
- 8 more results from BioPerl »
FAST::Bio::SeqIO::table - sequence input/output stream from a delimited table
This class transforms records in a table-formatted text file into FAST::Bio::Seq objects. A table-formatted text file of sequence records for the purposes of this module is defined as a text file with each row corresponding to a sequence, and the att...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC - Search in distribution- FAST::Bio::SeqIO - Handler for SeqIO Formats
- FAST::Bio::Seq - Sequence object, with features
- FAST::Bio::SearchIO - Driver for parsing Sequence Database Searches (BLAST, FASTA, ...)
- 10 more results from FAST »
bioseq - Manipulation of FASTA sequences based on BioPerl
bioseq is a command-line utility for common, routine sequence manipulations based on BioPerl modules including Bio::Seq, Bio::SeqIO, Bio::SeqUtils, and Bio::Tools::SeqStats. By default, bioseq assumes that both the input and the output files are in F...
YZHERNAND/Bio-BPWrapper-1.15 - 27 Feb 2024 16:55:31 UTC - Search in distribution
Mecom - A Perl module for protein contact interfaces evolutive analysis
This module integrates a workflow aimed to address the evolvability of the contact interfaces within a protein complex. The method "Mecom->run" launchs the whole analysis. Also, such workflow is divided into the following steps: Step 1, Structural an...
HVALVERDE/Mecom-1.15 - 13 Jul 2013 18:55:01 UTC - Search in distribution
Bio::ORA - Olfactory Receptor family Assigner (ORA) [bioperl module]
Bio::ORA is a featherweight object for identifying mammalian olfactory receptor genes. The sequences should not be longer than 40kb. The returned array include location, sequence and statistic for the putative olfactory receptor gene. Fully functiona...
CERATITES/ora-2.0 - 14 Jun 2016 15:58:05 UTC - Search in distribution
Bio::DB::GFF - Storage and retrieval of sequence annotation data
Bio::DB::GFF provides fast indexed access to a sequence annotation database. It supports multiple database types (ACeDB, relational), and multiple schemas through a system of adaptors and aggregators. The following operations are supported by this mo...
CJFIELDS/Bio-DB-GFF-1.7.4 - 08 Jan 2020 20:41:58 UTC - Search in distribution
Bio::CUA::CUB::Calculator - A module to calculate codon usage bias (CUB) indice for protein-coding sequences
Codon usage bias (CUB) can be represented at two levels, codon and sequence. The latter is often computed as the geometric means of the sequence's codons. This module caculates CUB metrics at sequence level. Supported CUB metrics include CAI (codon a...
FORTUNE/Bio-CUA-1.04 - 12 Jul 2015 19:52:07 UTC - Search in distribution
Bio::Graphics::Browser2::Plugin - Base class for gbrowse plugins.
This is the base class for Generic Genome Browser plugins. Plugins are perl .pm files that are stored in the gbrowse.conf/plugins directory. Plugins are activated in the gbrowse.conf/ configuration file by including them on the list indicated by the ...
LDS/GBrowse-2.56 - 15 Jan 2017 21:29:11 UTC - Search in distribution
Bio::SeqIO::excel - sequence input/output stream from a MSExcel-formatted table
This class transforms records in a MS Excel workbook file into Bio::Seq objects. It is derived from the table format module and merely defines additional properties and overrides the way to get data from the file and advance to the next record. The m...
CJFIELDS/Bio-SeqIO-excel-1.7.3 - 25 Sep 2018 01:30:22 UTC - Search in distribution