Search results for "Bio::SeqUtils"
Bio::SeqUtils - Additional methods for PrimarySeq objects
This class is a holder of methods that work on Bio::PrimarySeqI- compliant sequence objects, e.g. Bio::PrimarySeq and Bio::Seq. These methods are not part of the Bio::PrimarySeqI interface and should in general not be essential to the primary functio...
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC - Search in distribution- Bio::Search::Tiling::MapTileUtils - utilities for manipulating closed intervals for an HSP tiling algorithm
- Bio::Seq - Sequence object, with features
- Bio::CodonUsage::Table - for access to the Codon usage Database at http://www.kazusa.or.jp/codon.
FAST::Bio::SeqUtils - Additional methods for PrimarySeq objects
This class is a holder of methods that work on FAST::Bio::PrimarySeqI- compliant sequence objects, e.g. FAST::Bio::PrimarySeq and FAST::Bio::Seq. These methods are not part of the FAST::Bio::PrimarySeqI interface and should in general not be essentia...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC - Search in distribution
BioX::SeqUtils::Promoter
CSTEPHENE/BioX-SeqUtils-Promoter-0.1.1
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27 Aug 2010 06:13:15 UTC
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- BioX::SeqUtils::Promoter::Base
- BioX::SeqUtils::Promoter::Sequence - specific sequences and colors to be associated with them
- BioX::SeqUtils::Promoter::Alignment - gets sequences and performs mulitple alignement
- 9 more results from BioX-SeqUtils-Promoter »
BioX::SeqUtils::RandomSequence - Creates a random nuc or prot sequence with given nuc frequencies
Create random DNA, RNA and protein sequences. NUCLEOTIDE FREQUENCIES All four frequencies are set to "1" by default ( so that the probablity of each A, C, G, T is 0.25 ). The frequencies should always be positive integers, and you should consider wha...
ROGERHALL/BioX-SeqUtils-RandomSequence-0.94 - 13 Jul 2009 05:44:14 UTC - Search in distribution
BioX::Seq::Utils - miscellaneous sequence-related functions
"BioX::Seq::Utils" contain a number of sequence-related functions. They are general functions that are used often enough to warrant inclusion in a library but not often enough to warrant addition to the core "BioX::Seq" class. They may also include c...
VOLKENING/BioX-Seq-0.008009 - 08 Jan 2024 17:27:54 UTC - Search in distribution
bioseq - Manipulation of FASTA sequences based on BioPerl
bioseq is a command-line utility for common, routine sequence manipulations based on BioPerl modules including Bio::Seq, Bio::SeqIO, Bio::SeqUtils, and Bio::Tools::SeqStats. By default, bioseq assumes that both the input and the output files are in F...
YZHERNAND/Bio-BPWrapper-1.15 - 27 Feb 2024 16:55:31 UTC - Search in distribution