Bio::Tools::Est2Genome - Parse est2genome output, makes simple Bio::SeqFeature::Generic objects

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This module is a parser for "est2genome" [EMBOSS] alignments of est/cdna sequence to genomic DNA. This is generally accepted as the best program for predicting splice sites based on est/dnas (as far as I know). This module currently does not try pull...

CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC - Search in distribution

Bio::Tools::Run::Alignment::Exonerate

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Wrapper for Exonerate alignment program. You can get exonerate at http://www.ebi.ac.uk/~guy/exonerate/. This wrapper is written without parameter checking. All parameters are passed via the arugment parameter that is passed in the constructor. See SY...

CJFIELDS/BioPerl-Run-1.007003 - 08 Feb 2019 19:55:33 UTC - Search in distribution