Search results for "Bio::Tools::HMMER::Set"
Bio::Tools::HMMER::Set - Set of identical domains from HMMER matches
Represents a set of HMMER domains hitting one sequence. HMMER reports two different scores, a per sequence total score (and evalue) and a per domain score and evalue. This object represents a collection of the same domain with the sequence bits score...
CJFIELDS/Bio-SearchIO-hmmer-1.7.3 - 25 Sep 2018 00:26:52 UTC - Search in distribution- Bio::Tools::Hmmpfam - Parser for Hmmpfam program
- Bio::Tools::HMMER::Results - Object representing HMMER output results
- Bio::Tools::HMMER::Domain - One particular domain hit from HMMER
Bio::Tools::GuessSeqFormat - Module for determining the sequence format of the contents of a file, a string, or through a filehandle.
Bio::Tools::GuessSeqFormat tries to guess the format ("swiss", "pir", "fasta" etc.) of the sequence or MSA in a file, in a scalar, or through a filehandle. The guess() method of a Bio::Tools::GuessSeqFormat object will examine the data, line by line,...
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC - Search in distribution
Bio::Tools::Run::Genewise - Object for predicting genes in a given sequence given a protein
Genewise is a gene prediction program developed by Ewan Birney http://www.sanger.ac.uk/software/wise2. Available Params: NB: These should be passed without the '-' or they will be ignored, except switches such as 'hmmer' (which have no corresponding ...
CJFIELDS/BioPerl-Run-1.007003 - 08 Feb 2019 19:55:33 UTC - Search in distribution- Bio::Tools::Run::Hmmer - Wrapper for local execution of hmmalign, hmmbuild, hmmcalibrate, hmmemit, hmmpfam, hmmsearch
FAST::Bio::Tools::GuessSeqFormat - Module for determining the sequence format of the contents of a file, a string, or through a filehandle.
FAST::Bio::Tools::GuessSeqFormat tries to guess the format ("swiss", "pir", "fasta" etc.) of the sequence or MSA in a file, in a scalar, or through a filehandle. The guess() method of a FAST::Bio::Tools::GuessSeqFormat object will examine the data, l...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC - Search in distribution
Alien::SeqAlignment::hmmer3 - find, build and install the hmmer3 tools
This distribution provides HMMER3 so that it can be used by other Perl distributions that are on CPAN. The source code will be downloaded from the HMMER3 website, if the HMMER3 is not found in the system path. The url used is : http://eddylab.org/sof...
CHRISARG/Alien-SeqAlignment-hmmer3-0.03 - 24 Mar 2024 03:13:58 UTC - Search in distribution