Search results for "Bio::Tools::Prediction::Gene"
Bio::Tools::Prediction::Gene - a predicted gene structure feature
A feature representing a predicted gene structure. This class actually inherits off Bio::SeqFeature::Gene::Transcript and therefore has all that functionality, plus a few methods supporting predicted sequence features, like a predicted CDS and a pred...
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC - Search in distribution- Bio::Tools::Glimmer - parser for Glimmer 2.X/3.X prokaryotic and GlimmerM/GlimmerHMM eukaryotic gene predictions
- Bio::Tools::MZEF - Results of one MZEF run
- Bio::Tools::Grail - Results of one Grail run
- 11 more results from BioPerl »
Bio::Tools::Run::Genewise - Object for predicting genes in a given sequence given a protein
Genewise is a gene prediction program developed by Ewan Birney http://www.sanger.ac.uk/software/wise2. Available Params: NB: These should be passed without the '-' or they will be ignored, except switches such as 'hmmer' (which have no corresponding ...
CJFIELDS/BioPerl-Run-1.007003 - 08 Feb 2019 19:55:33 UTC - Search in distribution- Bio::Tools::Run::Genscan - Object for identifying genes in a given sequence given a matrix(for appropriate organisms).
Bio::ToolBox::GeneTools - SeqFeature agnostic methods for working with gene models
This module provides numerous exportable functions for working with gene SeqFeature models. This assumes that the gene models follow the BioPerl Bio::SeqFeatureI convention with nested SeqFeature objects representing the gene, transcript, and exons. ...
TJPARNELL/Bio-ToolBox-1.691 - 13 Oct 2022 18:07:52 UTC - Search in distribution
FAST::Bio::Tools::Genewise - Results of one Genewise run
This is the parser for the output of Genewise. It takes either a file handle or a file name and returns a FAST::Bio::SeqFeature::Gene::GeneStructure object....
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC - Search in distribution- FAST::Bio::Tools::Genomewise - Results of one Genomewise run