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Search results for "Bio::Tools::Run::Alignment::Sim4"

Bio::Tools::Run::Alignment::Sim4 - Wrapper for Sim4 program that allows for alignment of cdna to genomic sequences River stage one • 2 direct dependents • 2 total dependents

Sim4 program is developed by Florea et al. for aligning cdna/est sequence to genomic sequences Florea L, Hartzell G, Zhang Z, Rubin GM, Miller W. A computer program for aligning a cDNA sequence with a genomic DNA sequence. Genome Res 1998 Sep;8(9):96...

CJFIELDS/BioPerl-Run-1.007003 - 08 Feb 2019 19:55:33 UTC - Search in distribution

Bio::Tools::Sim4::Results - Results of one Sim4 run River stage two • 60 direct dependents • 65 total dependents

The sim4 module provides a parser and results object for sim4 output. The sim4 results are specialised types of SeqFeatures, meaning you can add them to AnnSeq objects fine, and manipulate them in the "normal" seqfeature manner. The sim4 Exon objects...

CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC - Search in distribution
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