Search results for "Bio::Tree::Node"
Bio::Tree::Node - A Simple Tree Node
Makes a Tree Node suitable for building a Tree....
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC - Search in distribution- Bio::Tree::NodeI - Interface describing a Tree Node
- Bio::Tree::NodeNHX - A Simple Tree Node with support for NHX tags
- Bio::Tree::AnnotatableNode - A Tree Node with support for annotation
- 18 more results from BioPerl »
FAST::Bio::Tree::Node - A Simple Tree Node
Makes a Tree Node suitable for building a Tree....
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC - Search in distribution- FAST::Bio::Tree::NodeI - Interface describing a Tree Node
- FAST::Bio::Taxon - A node in a represented taxonomy
- FAST::Bio::Species - Generic species object.
- 5 more results from FAST »
Bio::Phylo::Forest::DBTree::Result::Node - Phylogenetic database record as a node object
This package implements an object-relational interface to records in a phylogenetic database. This way, the record can be used as if it's a tree node with the same programming interface as is used by Bio::Phylo, but without making the demands that lo...
RVOSA/Bio-Phylo-Forest-DBTree-v0.1.2 - 24 Oct 2017 14:06:26 UTC - Search in distribution- megatree-pruner - Given a list of taxa, returns subtree from a database
- Bio::Phylo::Forest::DBTree - Phylogenetic database as a tree object
Tutorial - Hands-on tutorial for using Bio::NEXUS module.
Tutorial to get started using Bio::NEXUS module. INTRODUCTION The NEXUS file format standard of Maddison, et al. (1997) is designed to represent sets of data, including character data (e.g., molecular sequence alignments, morphological character sets...
ARLIN/Bio-NEXUS-0.78 - 10 Feb 2012 13:31:13 UTC - Search in distribution- nextool.pl - Command-line NEXUS file manipulation tool
- Bio::NEXUS - An object-oriented Perl Applications Programming Interface (API) for the NEXUS file format
- Bio::NEXUS::Node - Provides functions for manipulating nodes in trees
- 3 more results from Bio-NEXUS »
Bio::Phylo::Forest::Node - Node in a phylogenetic tree
This module has the getters and setters that alter the state of a node object. Useful behaviours (which are also available) are defined in the Bio::Phylo::Forest::NodeRole package....
RVOSA/Bio-Phylo-v2.0.1 - 30 Oct 2017 19:50:35 UTC - Search in distribution- Bio::Phylo::Forest - Container for tree objects
- Bio::Phylo::Project - Container for related data
- Bio::Phylo::NeXML::Writable - Superclass for objects that serialize to NeXML
- 16 more results from Bio-Phylo »
biotree - Tree manipulations based on BioPerl
Designed as a UNIX-like utility, biotree reads a tree file and reformats branches and nodes based on these BioPerl modules: Bio::TreeIO, Bio::Tree::Tree, Bio::Tree::Node, and Bio::Tree::TreeFunctionsI. Trees can be in any format supported by Bio::Tre...
YZHERNAND/Bio-BPWrapper-1.15 - 27 Feb 2024 16:55:31 UTC - Search in distribution- Bio::BPWrapper - command-line utilities for Bio::Perl
- Bio::BPWrapper::TreeManipulations - Functions for biotree
go-perl - perl modules for GO and other OBO ontologies
go-perl is part of the go-dev code distribution. It is also available as a seperate library in its own right. go-perl is a collection of perl modules for working with ontologies and data, in particular the Gene Ontology and other Open Bio-Ontologies....
CMUNGALL/go-perl-0.15 - 12 Jun 2013 16:22:41 UTC - Search in distribution
Net::SSLeay - Perl bindings for OpenSSL and LibreSSL
This module provides Perl bindings for libssl (an SSL/TLS API) and libcrypto (a cryptography API)....
CHRISN/Net-SSLeay-1.94 - 08 Jan 2024 01:22:27 UTC - Search in distribution
GO::AppHandle - Gene Ontology Data API handle
This is a module for accessing Gene Ontology data sources, e.g the GO relational database. It defines a set of methods that provide a consistent interface independent of the way the GO data is stored. For an explanation of the GO project, please visi...
SJCARBON/go-db-perl-0.04 - 21 Dec 2009 21:56:44 UTC - Search in distribution
format-tree.pl - Format (and annotate) trees for printing
DBAURAIN/Bio-MUST-Core-0.240390
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08 Feb 2024 21:02:36 UTC
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XML::EasySQL - a two-way SQL/XML base class for Perl. It was written by Curtis Lee Fulton (http://fultron.net; curtisf@fultron.net).
XML::EasySQL is a two-way SQL/XML base class for Perl. It acts as an emulsifier for the oil and water that is SQL and XML. Features: o Two-way transforms between XML and SQL data o smart SQL updates: only altered tables are updated o unlimited tree d...
CURTISF/XML-EasySQL-1.2 - 11 Jun 2004 23:46:42 UTC - Search in distribution
Bio::Chaos - utility class for handling Chaos-XML
This module contains some basic methods for manipulating a Chaos-XML document stored in memory as a Data::Stag tree. This class is fairly minimal. One of the principal ideas being Bio::Chaos is that access to the data model should be directly through...
CMUNGALL/Bio-Chaos-0.02 - 02 Sep 2005 18:47:08 UTC - Search in distribution
Tree::Cladogram - Render a cladogram using Imager or Image::Magick
"Tree::Cladogram" provides a mechanism to turn a tree into a cladogram image. The image is generated using Imager or Image::Magic. The image type created is determined by the suffix of the output file. See "What image formats are supported?" for deta...
RSAVAGE/Tree-Cladogram-1.04 - 01 Feb 2021 23:57:37 UTC - Search in distribution
Data::Edit::Xml - Edit data held in the XML format.
Edit data held in the XML format. Version 20201031. The following sections describe the methods in each functional area of this module. For an alphabetic listing of all methods by name see Index....
PRBRENAN/Data-Edit-Xml-20201031 - 31 Oct 2020 23:42:40 UTC - Search in distribution
Bio::PhyloNetwork - Module to compute with Phylogenetic Networks
Phylogenetic Networks This is a module to work with phylogenetic networks. Phylogenetic networks have been studied over the last years as a richer model of the evolutionary history of sets of organisms than phylogenetic trees, because they take not o...
CJFIELDS/Bio-PhyloNetwork-1.7.3 - 25 Sep 2018 01:36:59 UTC - Search in distribution
Bio::Phylo::Beagle - Perl wrapper around BEAGLE
This is a wrapper around the Beagle library (<http://dx.doi.org/10.1093/sysbio/syr100>) that accepts Bio::Phylo objects to simplify data handling....
RVOSA/Bio-Phylo-Beagle-0.03 - 04 Mar 2012 12:39:35 UTC - Search in distribution
Bio::DB::SoapEUtilities::Result - Accessor object for SoapEUtilities results
This module attempts to make Entrez Utilities SOAP responses as user-friendly and intuitive as possible. These responses can be complex structures with much useful data; but users will generally desire the values of some key fields. The Result object...
CJFIELDS/BioPerl-Run-1.007003 - 08 Feb 2019 19:55:33 UTC - Search in distribution- Bio::Tools::Run::Phylo::Gerp - Wrapper for GERP
- Bio::Tools::Run::Phylo::Semphy - Wrapper for Semphy
- Bio::Tools::Run::Phylo::Phast::PhastCons - Wrapper for footprinting using phastCons
- 1 more result from BioPerl-Run »
Bio::ConnectDots::SimpleGraph
This is a simple, hopefully fast undirected graph package. The only reason this exists is that the standard CPAN Graph pacakge, Graph::Base, is seriously broken. The package implements a small and eclectic assortment of standard graph algorithms that...
DBURDICK/Bio-ConnectDots-1.0.2 - 07 Apr 2005 22:06:44 UTC - Search in distribution
Bio::Network::ProteinNet - a representation of a protein interaction graph.
A ProteinNet is a representation of a protein interaction network. Its functionality comes from the Graph module of Perl and from BioPerl, the nodes or vertices in the network are Sequence objects. Nodes A node is one or more BioPerl sequence objects...
CJFIELDS/BioPerl-Network-1.006902 - 07 Nov 2011 16:27:40 UTC - Search in distribution