Search results for "Bio::Tree::Statistics"
Bio::Tree::Statistics - Calculate certain statistics for a Tree
This should be where Tree statistics are calculated. It was previously where statistics from a Coalescent simulation. It now contains several methods for calculating Tree-Trait statistics....
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC - Search in distribution
bioaln - Alignment manipulations based on BioPerl
bioaln performs common, routine manipulations of sequence alignments based on BioPerl modules including Bio::AlignIO, Bio::SimpleAlign and Bio::Align::Utilities. By default, bioaln assumes that both the input and the output files are in CLUSTALW form...
YZHERNAND/Bio-BPWrapper-1.15 - 27 Feb 2024 16:55:31 UTC - Search in distribution- biotree - Tree manipulations based on BioPerl
GO::AppHandle - Gene Ontology Data API handle
This is a module for accessing Gene Ontology data sources, e.g the GO relational database. It defines a set of methods that provide a consistent interface independent of the way the GO data is stored. For an explanation of the GO project, please visi...
SJCARBON/go-db-perl-0.04 - 21 Dec 2009 21:56:44 UTC - Search in distribution
Data::Edit::Xml - Edit data held in the XML format.
Edit data held in the XML format. Version 20201031. The following sections describe the methods in each functional area of this module. For an alphabetic listing of all methods by name see Index....
PRBRENAN/Data-Edit-Xml-20201031 - 31 Oct 2020 23:42:40 UTC - Search in distribution
Bundle::WormBase - Prerequisites for a WormBase installation
WormBase (http://www.wormbase.org/) is the online database for the model organism C. elegans and related nematodes. This bundle contains the minimum required Perl modules for running a local installation of WormBase....
TWH/Bundle-WormBase-0.001 - 27 Feb 2005 15:50:02 UTC - Search in distribution
Bio::Phylo::Matrices::MatrixRole - Extra behaviours for a character state matrix
This module defines a container object that holds Bio::Phylo::Matrices::Datum objects. The matrix object inherits from Bio::Phylo::Listable, so the methods defined there apply here....
RVOSA/Bio-Phylo-v2.0.1 - 30 Oct 2017 19:50:35 UTC - Search in distribution- Bio::Phylo::EvolutionaryModels - Evolutionary models for phylogenetic trees and methods to sample these Klaas Hartmann, September 2007
- Bio::Phylo::Models::Substitution::Dna - DNA substitution model
- Bio::Phylo::Models::Substitution::Binary - Binary character substitution model
- 1 more result from Bio-Phylo »
lib/Bio/DB/BigBed.pm
This module provides a high-level interface to Jim Kent's BigBed files, a type of indexed genome feature database that can be randomly accessed across the network. Please see http://genome.ucsc.edu/FAQ/FAQformat.html for information about creating th...
LDS/Bio-BigFile-1.07 - 24 Feb 2012 17:20:46 UTC - Search in distribution
Bio::Tools::Run::Phylo::Phyml - Wrapper for rapid reconstruction of phylogenies using Phyml
This is a wrapper for running the phyml application by Stephane Guindon and Olivier Gascuel. You can download it from: http://atgc.lirmm.fr/phyml/ Installing After downloading, you need to rename a the copy of the program that runs under your operati...
CJFIELDS/BioPerl-Run-1.007003 - 08 Feb 2019 19:55:33 UTC - Search in distribution
Bio::FastParsers::Blast::Xml - Front-end class for XML BLAST parser
This module implements a parser for the XML output format of the BLAST program (e.g., "-outfmt 5"). It provides methods for iterating over and querying all elements of the XML tree. The hierarchy is as follows: Bio::FastParsers::Blast::Xml Bio::FastP...
DBAURAIN/Bio-FastParsers-0.221230 - 03 May 2022 21:00:40 UTC - Search in distribution