Search results for "Bio::TreeIO"
Bio::TreeIO - Parser for Tree files
This is the driver module for Tree reading from data streams and flatfiles. This is intended to be able to create Bio::Tree::TreeI objects....
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC - Search in distribution- Bio::TreeIO::pag - Bio::TreeIO driver for Pagel format
- Bio::TreeIO::nhx - TreeIO implementation for parsing Newick/New Hampshire eXtendend (NHX) format.
- Bio::TreeIO::nexus - A TreeIO driver module for parsing Nexus tree output from PAUP
- 18 more results from BioPerl »
Bio::TreeIO::nexml - A TreeIO driver module for parsing NeXML tree files
This is a driver module for parsing tree data in a NeXML format. For more information on NeXML, visit <http://www.nexml.org>....
CJFIELDS/Bio-NeXMLIO-1.7.3 - 11 Sep 2018 18:47:25 UTC - Search in distribution- Bio::NexmlIO - stream handler for NeXML documents
- Bio::SeqIO::nexml - NeXML sequence input/output stream
- Bio::AlignIO::nexml - NeXML format sequence alignment input/output stream driver
- 1 more result from Bio-NeXMLIO »
Bio::TreeIO::svggraph - A simple output format that converts a Tree object to an SVG output
This outputs a tree as an SVG graphic using the SVG::Graph API...
CJFIELDS/Bio-TreeIO-svggraph-1.7.3 - 25 Sep 2018 01:27:35 UTC - Search in distribution
biotree - Tree manipulations based on BioPerl
Designed as a UNIX-like utility, biotree reads a tree file and reformats branches and nodes based on these BioPerl modules: Bio::TreeIO, Bio::Tree::Tree, Bio::Tree::Node, and Bio::Tree::TreeFunctionsI. Trees can be in any format supported by Bio::Tre...
YZHERNAND/Bio-BPWrapper-1.15 - 27 Feb 2024 16:55:31 UTC - Search in distribution- Bio::BPWrapper - command-line utilities for Bio::Perl
FAST::Bio::SeqIO::seqxml - SeqXML sequence input/output stream
This object can transform FAST::Bio::Seq objects to and from SeqXML format. For more information on the SeqXML standard, visit <http://www.seqxml.org>. In short, SeqXML is a lightweight sequence format that takes advantage of the validation capabilit...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC - Search in distribution- FAST::Bio::Tree::NodeI - Interface describing a Tree Node
- FAST::Bio::Tree::TreeI - A Tree object suitable for lots of things, designed originally for Phylogenetic Trees.
- FAST::Bio::Tree::TreeFunctionsI - Decorated Interface implementing basic Tree exploration methods
- 3 more results from FAST »
Bio::Tools::Run::Alignment::Clustalw - Object for the calculation of a multiple sequence alignment from a set of unaligned sequences or alignments using the Clustalw program
Note: this DESCRIPTION only documents the Bioperl interface to Clustalw. Clustalw, itself, is a large & complex program - for more information regarding clustalw, please see the clustalw documentation which accompanies the clustalw distribution. Clus...
CDRAUG/Bio-Tools-Run-Alignment-Clustalw-1.7.4 - 11 Jul 2018 14:57:04 UTC - Search in distribution
Bio::Tools::Run::Phylo::SLR - Wrapper around the SLR program
This is a wrapper around the SLR program. See http://www.ebi.ac.uk/goldman/SLR/ for more information. This module is more about generating the proper ctl file and will run the program in a separate temporary directory to avoid creating temp files all...
CJFIELDS/BioPerl-Run-1.007003 - 08 Feb 2019 19:55:33 UTC - Search in distribution- Bio::Tools::Run::Simprot - Wrapper around the Simprot program. Wrapper for the calculation of a multiple sequence alignment from a phylogenetic tree
- Bio::Tools::Run::Phylo::Molphy::ProtML - A wrapper for the Molphy pkg app ProtML
- Bio::Tools::Run::Phylo::Hyphy::REL - Wrapper around the Hyphy REL analysis
- 5 more results from BioPerl-Run »
Bio::Tree::Draw::Cladogram - Drawing phylogenetic trees in Encapsulated PostScript (EPS) format.
Bio::Tree::Draw::Cladogram is a Perl tool for drawing Bio::Tree::Tree objects in Encapsulated PostScript (EPS) format. It can be utilized both for displaying a single phylogenetic tree (a cladogram) and for the comparative display of two phylogenetic...
CJFIELDS/Bio-Tree-Draw-Cladogram-1.7.3 - 25 Sep 2018 01:26:07 UTC - Search in distribution