Search results for "Bio::Variation::SNP"
Bio::Variation::SNP - submitted SNP
Inherits from Bio::Variation::SeqDiff and Bio::Variation::Allele, with additional methods that are (db)SNP specific (ie, refSNP/subSNP IDs, batch IDs, validation methods)....
CJFIELDS/Bio-Variation-1.7.5 - 06 Jan 2020 19:59:16 UTC - Search in distribution
Bio::ClusterIO::dbsnp - dbSNP input stream
Parse dbSNP XML files, one refSNP entry at a time. Note this handles dbSNPp output generated by NBCI's eutils and does NOT parse output derived from SNP's XML format (found at ftp://ftp.ncbi.nih.gov/snp/)....
CJFIELDS/Bio-Cluster-1.7.3 - 01 Oct 2018 04:35:53 UTC - Search in distribution
Bio::SeqFeature::Tools::TypeMapper - maps $seq_feature-gtprimary_tag
This class implements an object for mapping between types; for example, the types in a genbank feature table, and the types specified in the Sequence Ontology. You can specify your own mapping, either as a simple hash index, or by providing your own ...
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC - Search in distribution
Bio::Chado::Schema::Result::Sequence::Featureloc
The location of a feature relative to another feature. Important: interbase coordinates are used. This is vital as it allows us to represent zero-length features e.g. splice sites, insertion points without an awkward fuzzy system. Features typically ...
RBUELS/Bio-Chado-Schema-0.20000 - 06 Jul 2012 19:06:31 UTC - Search in distribution
FAST::Bio::SeqFeature::Tools::TypeMapper - maps $seq_feature-gtprimary_tag
This class implements an object for mapping between types; for example, the types in a genbank feature table, and the types specified in the Sequence Ontology. You can specify your own mapping, either as a simple hash index, or by providing your own ...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC - Search in distribution