Search results for "Bundle::BioPerl"
Bundle::BioPerl - A bundle to install external CPAN modules used by BioPerl 1.5.2
The BioPerl distribution from http://bioperl.org contains code and modules that may use or require additional 'external' perl modules for advanced functionality. Many of the external modules are not contained within the standard Perl distribution. Th...
CJFIELDS/Bundle-BioPerl-2.1.9 - 16 Jan 2015 20:05:40 UTC - Search in distribution
Dist::Zilla::PluginBundle::BioPerl - Build your distributions like Bioperl does
This is the Dist::Zilla configuration for the BioPerl project. It is roughly equivalent to: [@Filter] -bundle = @Basic ; the basic to maintain and release CPAN distros -remove = Readme ; avoid conflict since we already have a README file [MetaConfig]...
CDRAUG/Dist-Zilla-PluginBundle-BioPerl-0.27 - 14 Sep 2018 15:09:03 UTC - Search in distribution- Pod::Weaver::PluginBundle::BioPerl - Configure your POD like Bioperl does
Tutorial - Hands-on tutorial for using Bio::NEXUS module.
Tutorial to get started using Bio::NEXUS module. INTRODUCTION The NEXUS file format standard of Maddison, et al. (1997) is designed to represent sets of data, including character data (e.g., molecular sequence alignments, morphological character sets...
ARLIN/Bio-NEXUS-0.78 - 10 Feb 2012 13:31:13 UTC - Search in distribution
Module::Build::Functions - Module::Install style syntax for Module::Build
This module gives a Module::Install-like syntax to Module::Build, using modules (other than Module::Build itself) that are in the core in 5.006. Most commands from Module::Install are supported, and most parameters to Module::Build's "new" routine ar...
NPLATONOV/Module-Build-Functions-0.04 - 20 Jan 2010 19:18:06 UTC - Search in distribution
Bio::SeqIO::table - sequence input/output stream from a delimited table
This class transforms records in a table-formatted text file into Bio::Seq objects. A table-formatted text file of sequence records for the purposes of this module is defined as a text file with each row corresponding to a sequence, and the attribute...
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC - Search in distribution- Bio::SeqIO::fastq - fastq sequence input/output stream
- Bio::Root::HTTPget - module for fallback HTTP get operations when LWP:: is unavailable
- Bio::Tools::Alignment::Trim - A kludge to do specialized trimming of sequence based on quality.
Bio::SeqIO::excel - sequence input/output stream from a MSExcel-formatted table
This class transforms records in a MS Excel workbook file into Bio::Seq objects. It is derived from the table format module and merely defines additional properties and overrides the way to get data from the file and advance to the next record. The m...
CJFIELDS/Bio-SeqIO-excel-1.7.3 - 25 Sep 2018 01:30:22 UTC - Search in distribution
FAST::Bio::SeqIO::table - sequence input/output stream from a delimited table
This class transforms records in a table-formatted text file into FAST::Bio::Seq objects. A table-formatted text file of sequence records for the purposes of this module is defined as a text file with each row corresponding to a sequence, and the att...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC - Search in distribution- FAST::Bio::SeqIO::fastq - fastq sequence input/output stream
- FAST::Bio::SeqIO::excel - sequence input/output stream from a MSExcel-formatted table
- FAST::FAST::Bio::Root::HTTPget - module for fallback HTTP get operations when LWP:: is unavailable
Fry::Lib::BioPerl - Commandline enables common tasks for sequence and alignment objects for Bio::Perl modules.
The main point of this library is to view,retrieve and create sequences and alignments. All objects created are indexed by the shell as Fry::Obj objects. See Fry::Lib::Default for commands that you can perform on these objects. Sequence and alignment...
BOZO/Fry-Lib-BioPerl-0.15 - 14 Jan 2005 20:54:17 UTC - Search in distribution
Bio::LITE::Taxonomy - Lightweight and efficient taxonomic tree manager
This module provides easy and efficient access to different taxonomies (NCBI and RDP) with minimal dependencies and without intermediate databases. This module should be used through specific taxonomic interfaces (e.g. Bio::LITE::Taxonomy::NCBI or Bi...
MOTIF/Bio-LITE-Taxonomy-0.07 - 24 May 2011 11:20:38 UTC - Search in distribution
Bio::LITE::Taxonomy::NCBI - Lightweight and efficient NCBI taxonomic manager
This module provides easy and efficient access to the NCBI taxonomy with minimal dependencies and without intermediary databases. This module is not part of the Bioperl bundle. For bioperl alternatives see the "SEE ALSO" section of this document....
MOTIF/Bio-LITE-Taxonomy-NCBI-0.1 - 20 May 2015 08:51:23 UTC - Search in distribution
Bundle::WormBase - Prerequisites for a WormBase installation
WormBase (http://www.wormbase.org/) is the online database for the model organism C. elegans and related nematodes. This bundle contains the minimum required Perl modules for running a local installation of WormBase....
TWH/Bundle-WormBase-0.001 - 27 Feb 2005 15:50:02 UTC - Search in distribution
Bio::LITE::Taxonomy::RDP - Lightweight and efficient RDP taxonomic manager
This module provides easy and efficient access to the RDP taxonomy with minimal dependencies and without intermediary databases. This module is not part of the Bioperl bundle....
MOTIF/Bio-LITE-Taxonomy-RDP-0.03 - 24 May 2011 11:21:02 UTC - Search in distribution