Search results for "Pubmed"
Peptide::Pubmed - extract peptide sequences from MEDLINE article abstracts.
Provides common methods to parse peptide sequences from Pubmed abstracts. The computed variables can be used for classification in external programs. For all variables below: Varables (Abst|Word)Is*: Allowed values: 1/0. Variables (Abst|Word)Num*: Al...
SHTATLAND/Peptide-Pubmed-1.02 - 26 Jul 2007 04:55:44 UTC - Search in distribution
Catmandu::PubMed - Catmandu module for working with PubMed data
NICS/Catmandu-PubMed-0.01
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05 Oct 2012 14:21:45 UTC
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- Catmandu::Importer::PubMed - Package that imports PubMed data.
WWW::Search::PubMed - Search the NCBI PubMed abstract database.
WWW::Search::PubMed provides a WWW::Search backend for searching the NCBI/PubMed abstracts database....
GWILLIAMS/WWW-Search-PubMed-1.004 - 01 Nov 2007 03:59:32 UTC - Search in distribution- WWW::Search::PubMed::Result - NCBI Search Result
Bio::Biblio::PubmedArticle - representation of a PUBMED article
A storage object for a general PUBMED article. See its place in the class hierarchy in http://www.ebi.ac.uk/~senger/openbqs/images/bibobjects_perl.gif Attributes The following attributes are specific to this class (however, you can also set and get a...
CDRAUG/Bio-Biblio-1.70 - 24 Mar 2013 00:19:52 UTC - Search in distribution- Bio::Biblio::PubmedBookArticle - representation of a PUBMED book article
- Bio::Biblio::PubmedJournalArticle - representation of a PUBMED journal article
- Bio::Biblio::IO::pubmed2ref - a converter of a raw hash to PUBMED citations
- 5 more results from Bio-Biblio »
lib/WWW/Wikipedia/TemplateFiller/Source/PubmedId.pm
DIBERRI/WWW-Wikipedia-TemplateFiller-0.13
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15 May 2009 02:58:15 UTC
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- WWW::Wikipedia::TemplateFiller - Fill Wikipedia templates with your eyes closed
physeter.pl - Taxonomic parser for BLAST reports
DBAURAIN/Bio-MUST-Apps-Physeter-0.213470
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13 Dec 2021 11:04:21 UTC
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smonitor - command-line tool for monitoring services
smonitor is a command-line tool for monitoring (checking) various services and other parts of your IT infrastructure. In order to run it, you need to have a configuration file that defines what services to check and how to do the checking. Details ho...
TULSOFT/Monitor-Simple-0.2.8 - 08 Jun 2013 07:34:40 UTC - Search in distribution- Monitor::Simple - Simple monitoring of applications and services
Boulder - An API for hierarchical tag/value structures
Boulder IO Boulder IO is a simple TAG=VALUE data format designed for sharing data between programs connected via a pipe. It is also simple enough to use as a common data exchange format between databases, Web pages, and other data representations. Th...
LDS/Boulder-1.30 - 14 Dec 2002 02:06:29 UTC - Search in distribution- Boulder::LocusLink - Fetch LocusLink data records as parsed Boulder Stones
Bio::KBase::CDMI::CDMI_EntityAPIImpl
RDO/Bio-KBase-0.06
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15 Aug 2012 23:56:34 UTC
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Bio::DB::EUtilities - Webagent which interacts with and retrieves data from NCBI's eUtils.
This is a general webagent which posts and retrieves data to NCBI's eUtils service using their CGI interface. A separate project, currently present in BioPerl-Run, utilizes the SOAP-based interface for eUtils. A full explanation of the eUtils interfa...
CJFIELDS/Bio-EUtilities-1.77 - 09 Mar 2020 18:59:57 UTC - Search in distribution
AIIA::GMT - a XML-RPC client of a web-service server, AIIA gene mention tagger, which provides the service to recognize named entities in the biomedical articles
AIIA::GMT is a XML-RPC client of a web-service server, AIIA gene mention tagger, which provides the service to recognize named entities in the biomedical articles. AIIA gene mention tagger, developed by Adaptive Internet Intelligent Agents Lab, Insti...
CJUKUO/AIIA-GMT-0.05 - 13 May 2008 02:33:32 UTC - Search in distribution
Bio::KEGG - Perl module to fetch details parsed by Bio::KEGGI.
This module is used to fetch details from object created by Bio::KEGGI. Create a new Bio::KEGG object is not supported. For more details for different input files, please refer to documents of L<Bio::KEGG::genome>, L<Bio::KEGG::ko>, L<Bio::KEGG::path...
ZEROLIU/Bio-KEGGI-v0.1.50 - 29 Mar 2011 06:56:26 UTC - Search in distribution
Bib::Tools - For managing collections of Bib::CrossRef references.
DOUGLEITH/Bib-Tools-0.17
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13 Apr 2019 11:44:16 UTC
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Bio::MAGE::BQS::BibliographicReference - Class for the MAGE-OM API
From the MAGE-OM documentation for the "BibliographicReference" class: Attributes for the most common criteria and association with OntologyEntry allows criteria to be specified for searching for a Bibliographic reference....
JASONS/Bio-MAGE-20030502.3 - 14 May 2007 10:56:09 UTC - Search in distribution
FAST::Bio::SeqIO::chadoxml - chadoxml sequence output stream
This object can transform FAST::Bio::Seq objects to chadoxml flat file databases (for chadoxml DTD, see http://gmod.cvs.sourceforge.net/gmod/schema/chado/dat/chado.dtd). This is currently a write-only module. $seqio = FAST::Bio::SeqIO->new(-file => '...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC - Search in distribution- FAST::Bio::AlignIO::stockholm - stockholm sequence input/output stream
- FAST::Bio::Annotation::Reference - Specialised DBLink object for Literature References
WWW::Search::HGNC - Access HGNC's database of proteins
This module provides access to the HUGO Gene Nomenclature Committee (HGNC) database of human proteins (<http://www.gene.ucl.ac.uk/nomenclature/>). If you are unfamiliar with the WWW::Search interface, see the synopsis for an example of how you might ...
DIBERRI/WWW-Search-HGNC-0.03 - 07 Nov 2008 21:55:53 UTC - Search in distribution
Metabolomics::Fragment::Annotation - Perl extension for fragment annotation in metabolomics
Metabolomics::Fragment::Annotation is a full package for Perl dev allowing MS fragments annotation with ab initio database, contaminant and public metabolites ressources. All resources used are described and available here:...
GIACOMONI/Metabolomics-Fragment-Annotation-0.6.9 - 17 Apr 2023 15:17:23 UTC - Search in distribution
Bio::AlignIO::stockholm - stockholm sequence input/output stream
This object can transform Bio::Align::AlignI objects to and from stockholm flat file databases. This has been completely refactored from the original stockholm parser to handle annotation data and now includes a write_aln() method for (almost) comple...
CJFIELDS/Bio-AlignIO-stockholm-1.7.3 - 25 Sep 2018 00:14:27 UTC - Search in distribution
Bio::DB::TFBS::transfac_pro - An implementation of Bio::DB::TFBS which uses local flat files for transfac pro
This is an implementation which uses local flat files and the DB_File module RECNO data structures to manage a local copy of the Transfac Pro TFBS database. Required database files require a license which can be obtained via http://www.biobase-intern...
CJFIELDS/Bio-DB-TFBS-1.7.3 - 25 Sep 2018 00:20:12 UTC - Search in distribution