Search results for "blast search"
Bio::Gonzales::Search::IO::BLAST
JWB/Bio-Gonzales-0.083
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02 Jan 2021 23:10:48 UTC
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- Bio::Gonzales - Speedy functions to manipulate biological data
Bio::SearchIO::blast - Event generator for event based parsing of blast reports
This object encapsulated the necessary methods for generating events suitable for building Bio::Search objects from a BLAST report file. Read the Bio::SearchIO for more information about how to use this. This driver can parse: * NCBI produced plain t...
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC - Search in distribution- Bio::Search::BlastUtils - Utility functions for Bio::Search:: BLAST objects
- Bio::Search::Hit::BlastHit - Blast-specific subclass of Bio::Search::Hit::GenericHit
- Bio::Search::HSP::BlastHSP - Bioperl BLAST High-Scoring Pair object
- 46 more results from BioPerl »
FAST::Bio::SearchIO::blast - Event generator for event based parsing of blast reports
This object encapsulated the necessary methods for generating events suitable for building FAST::Bio::Search objects from a BLAST report file. Read the FAST::Bio::SearchIO for more information about how to use this. This driver can parse: * NCBI prod...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC - Search in distribution- FAST::Bio::Search::BlastUtils - Utility functions for FAST::Bio::Search:: BLAST objects
- FAST::Bio::Search::HSP::BlastPullHSP - A parser and HSP object for BlastN hsps
- FAST::Bio::Search::Hit::BlastPullHit - A parser and hit object for BLASTN hits
- 31 more results from FAST »
Bio::SearchIO::XML::BlastHandler - XML Handler for NCBI Blast XML parsing.
This is the XML handler for BLAST XML parsing. Currently it passes elements off to the event handler, which is ultimately responsible for Bio::Search object generation. This was recently split off from the original code for Bio::SearchIO::blastxml pr...
CJFIELDS/Bio-SearchIO-blastxml-1.70 - 04 Jan 2018 02:12:33 UTC - Search in distribution- Bio::SearchIO::XML::PsiBlastHandler - XML Handler for NCBI Blast PSIBLAST XML parsing.
- Bio::SearchIO::blastxml - A SearchIO implementation of NCBI Blast XML parsing.
perlepigraphs - list of Perl release epigraphs
Many Perl release announcements included an *epigraph*, a short excerpt from a literary or other creative work, chosen by the pumpking or release manager. This file assembles the known list of epigraph for posterity, and also links to the release ann...
PEVANS/perl-5.38.2 - 29 Nov 2023 16:10:36 UTC - Search in distribution- perlepigraphs - list of Perl release epigraphs
Stone - In-memory storage for hierarchical tag/value data structures
A Stone consists of a series of tag/value pairs. Any given tag may be single-valued or multivalued. A value can be another Stone, allowing nested components. A big Stone can be made up of a lot of little stones (pebbles?). You can obtain a Stone from...
LDS/Boulder-1.30 - 14 Dec 2002 02:06:29 UTC - Search in distribution- Boulder - An API for hierarchical tag/value structures
- Boulder::Genbank - Fetch Genbank data records as parsed Boulder Stones
- Boulder::Blast - Parse and read BLAST files
Bio::NEXUS
This User Manual explains the motivation for developing the Bio::NEXUS library, the principles underlying its organization, and its use in developing software for evolutionary informatics. This manual also provides information on how to use two demon...
ARLIN/Bio-NEXUS-0.78 - 10 Feb 2012 13:31:13 UTC - Search in distribution
pod::INSTALL
LDS/GBrowse-2.56
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15 Jan 2017 21:29:11 UTC
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- pod::CONFIGURE_HOWTO
- Bio::Graphics::Browser::Plugin - Base class for gbrowse plugins.
- Bio::Graphics::Browser2::Plugin - Base class for gbrowse plugins.
IO::ReadPreProcess - Macro processing built into IO::File replacement
Provide an 'intelligent' bottom end read function for scripts, what is read is pre-processed before the script sees it. Your program does not need code to conditionally discard some input, include files and substitute values. An easy way of reading i...
ADDW/IO-ReadPreProcess-0.85 - 15 Aug 2017 22:29:18 UTC - Search in distribution
share::Synopsis::S04-control
HINRIK/Perl6-Doc-0.47
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06 Dec 2010 03:25:27 UTC
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TAIR::Blast - A module to gather automated BLAST result from TAIR (http://www.arabidopsis.org/Blast/index.jsp)
HSUREN/TAIR-Blast-1.01
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10 Apr 2011 02:14:12 UTC
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Bio::Graphics::Panel - Generate GD images of Bio::Seq objects
The Bio::Graphics::Panel class provides drawing and formatting services for any object that implements the Bio::SeqFeatureI interface, including Ace::Sequence::Feature and Das::Segment::Feature objects. It can be used to draw sequence annotations, ph...
CJFIELDS/Bio-Graphics-2.40 - 16 Dec 2016 04:50:36 UTC - Search in distribution
Set::CSS - set of CSS classes
Inheriting from Set::Object this class provides methods for emitting HTML. If $args{on_empty} is not true and the set is empty, then no output shall be emitted....
SHLOMIF/Set-CSS-0.2.0 - 14 Dec 2021 12:57:42 UTC - Search in distribution
MOBY::Central - API for communicating with the MOBY Central registry
Used to do various transactions with MOBY-Central registry, including registering new Object and Service types, querying for these types, registering new Servers/Services, or queryiong for available services given certain input/output or service type...
EKAWAS/MOBY-1.16 - 29 Mar 2015 13:34:52 UTC - Search in distribution
Bio::Perl - Functional access to BioPerl for people who don't know objects
Easy first time access to BioPerl via functions. read_sequence Title : read_sequence Usage : $seq = read_sequence('sequences.fa') $seq = read_sequence($filename,'genbank'); # pipes are fine $seq = read_sequence("my_fetching_program $id |",'fasta'); F...
CJFIELDS/Bio-Procedural-1.7.4 - 29 Nov 2019 20:57:49 UTC - Search in distribution
Physeter::Manual - User Guide for Physeter
DBAURAIN/Bio-MUST-Apps-Physeter-0.213470
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13 Dec 2021 11:04:21 UTC
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MRS::Client - A SOAP-based client of the MRS Retrieval server
This module is a SOAP-based (Web Services) client that can talk, and get data from an MRS server, a search engine for biological and medical databanks that searches well over a terabyte of indexed text. See details about MRS and its author Maarten He...
TULSOFT/MRS-Client-1.0.1 - 22 Jun 2013 11:50:59 UTC - Search in distribution
Padre::Browser - documentation browser for Padre
Provide an interface for retrieving / generating documentation, resolving terms to documentation (search?) and formatting documentation. Allow new packages to be loaded and interrogated for the MIME types they can generate documentation for. Provide ...
SZABGAB/Padre-1.02 - 14 Jun 2023 07:09:43 UTC - Search in distribution
Bio::Index::Hmmer - indexes HMMER reports and supports retreival based on query
This object allows one to build an index on a HMMER file (or files) and provide quick access to the HMMER report for that accession. For best results 'use strict'. You can also set or customize the unique key used to retrieve by writing your own func...
CJFIELDS/Bio-SearchIO-hmmer-1.7.3 - 25 Sep 2018 00:26:52 UTC - Search in distribution- Bio::Search::HSP::HMMERHSP - A HSP object for HMMER results
- Bio::Search::Hit::hmmer3Hit - DESCRIPTION of Object
- Bio::Search::Hit::HMMERHit - A Hit module for HMMER hits