#NEXUS
[This file was checked by nexfix.pl, v1.5 on Fri Oct 14 10:39:30 2005]
BEGIN TAXA;
DIMENSIONS ntax=8;
TAXLABELS Anopheles_gambiae_agCT55686 Arabidopsis_thaliana_18404062 Caenorhabditis_elegans_17554758 Drosophila_melanogaster_7295730 Homo_sapiens_4507761 Plasmodium_falciparum_23619579 Saccharomyces_cerevisiae_6322947 Schizosaccharomyces_pombe_19114835;
END;
BEGIN TREES;
TREE Tree = (Plasmodium_falciparum_23619579:1800,(Arabidopsis_thaliana_18404062:1642,((Schizosaccharomyces_pombe_19114835:837,Saccharomyces_cerevisiae_6322947:837)inode837:705,(Caenorhabditis_elegans_17554758:1220,(Homo_sapiens_4507761:1063,(Anopheles_gambiae_agCT55686:250,Drosophila_melanogaster_7295730:250)inode250:813)inode1063:157)inode1220:322)inode1542:100)inode1642:158)root;
END;
BEGIN CHARACTERS;
TITLE intron;
DIMENSIONS nchar=9;
CHARLABELS
'29-2' '41-2' '136-1' '172-1' '223-1' '240-0' '259-1' '326-2' '393-0';
MATRIX
Plasmodium_falciparum_23619579 000001000
Homo_sapiens_4507761 001010010
Arabidopsis_thaliana_18404062 001010011
Anopheles_gambiae_agCT55686 100000100
Schizosaccharomyces_pombe_19114835 000000000
Caenorhabditis_elegans_17554758 000100100
Saccharomyces_cerevisiae_6322947 010000000
Drosophila_melanogaster_7295730 000000000
;
END;
BEGIN CHARACTERS;
TITLE protein;
DIMENSIONS nchar=140;
MATRIX
Plasmodium_falciparum_23619579 -----------MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAIEPSLAQLAQKYNCQKLICRKCYARLHPRATNCRNKKCGRTNQLRPKKKLK-
Homo_sapiens_4507761 -----------MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK-
Arabidopsis_thaliana_18404062 -----------MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMMLARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK-
Anopheles_gambiae_agCT55686 QSVPANRHVGNMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRILAQKYNCDKMICRKCYARLHPRATNCRKKKCGHTNNLRPKKKLK-
Schizosaccharomyces_pombe_19114835 -----------MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQLRPKKKLK-
Caenorhabditis_elegans_17554758 -----------MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKQICRKCYARLPPRASNCRKKKCGHSSELRIKKKLK-
Saccharomyces_cerevisiae_6322947 -----------MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASKYNCDKSVCRKCYARLPPRATNCRKRKCGHTNQLRPKKKLK-
Drosophila_melanogaster_7295730 -----------MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRILAQKYNCDKMICRKCYARLHPRATNCRKKKCGHTNNLRPKKKLK-
;
END;
BEGIN CHARACTERS;
TITLE dna;
DIMENSIONS nchar=420;
MATRIX
Plasmodium_falciparum_23619579 ---------------------------------ATGCAAATTTTTGTAAAAACATTAACTGGAAAAACAATTACCCTTGATGTTGAGCCATCTGATACGATTGAGAATGTTAAGGCAAAAATTCAAGATAAAGAAGGAATTCCTCCTGATCAACAAAGATTAATATTTGCTGGAAAACAATTAGAAGATGGAAGGACCTTATCAGATTATAATATTCAAAAGGAATCAACTTTACACTTGGTTTTAAGATTAAGAGGAGGAGCCATAGAACCATCCTTAGCACAACTAGCTCAAAAATACAATTGCCAAAAATTAATTTGTAGAAAATGTTATGCTAGATTACACCCAAGAGCTACCAACTGCAGAAATAAAAAATGTGGAAGAACCAATCAACTAAGACCAAAGAAAAAACTCAAA---
Homo_sapiens_4507761 ---------------------------------ATGCAGATCTTTGTGAAGACCCTCACTGGCAAAACCATCACCCTTGAGGTCGAGCCCAGTGACACCATTGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGACCAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTACAACATCCAGAAAGAGTCCACCCTGCACCTGGTGTTGCGCCTGCGAGGTGGCATTATTGAGCCTTCTCTCCGCCAGCTTGCCCAGAAATACAACTGCGACAAGATGATCTGCCGCAAGTGCTATGCTCGCCTTCACCCTCGTGCTGTCAACTGCCGCAAGAAGAAGTGTGGTCACACCAACAACCTGCGTCCCAAGAAGAAGGTCAAA---
Arabidopsis_thaliana_18404062 ---------------------------------ATGCAGATTTTCGTGAAAACGCTAACCGGCAAGACCATCACCCTCGAGGTCGAGAGCAGTGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAAGAAGGAATTCCTCCGGACCAGCAGAGGTTGATCTTCGCCGGAAAACAGCTTGAAGATGGTCGTACCTTGGCTGACTACAACATCCAGAAAGAGTCGACTTTGCATCTTGTTCTGAGGCTTAGGGGAGGTATCATTGAGCCTTCATTGATGATGTTGGCTCGTAAGTATAACCAAGACAAAATGATTTGTCGCAAGTGTTATGCTCGTCTCCACCCAAGAGCTGTGAACTGCAGGAAGAAGAAGTGTGGCCATAGCAACCAGTTGAGGCCAAAGAAGAAGATCAAG---
Anopheles_gambiae_agCT55686 CAAAGTGTACCAGCGAACAGACACGTTGGAAACATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGCCTTCGGACACGATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACTCTCTCCGACTACAACATTCAGAAGGAATCGACCCTTCATCTGGTGCTGCGACTCCGTGGTGGTATCATTGAGCCGTCTCTGCGTATCTTGGCTCAAAAGTACAACTGCGACAAGATGATTTGCCGCAAGTGCTACGCACGCCTGCACCCGAGAGCGACCAACTGCCGCAAGAAAAAGTGTGGCCACACCAACAACCTGCGCCCGAAGAAGAAGCTGAAG---
Schizosaccharomyces_pombe_19114835 ---------------------------------ATGCAGATTTTTGTCAAGACTTTGACTGGTAAAACTATAACCCTAGAGGTGGAATCCTCTGACACTATTGACAATGTCAAGAGTAAGATTCAGGACAAGGAAGGAATTCCTCCTGATCAACAACGATTGATTTTTGCCGGAAAGCAGTTGGAGGATGGTCGTACTCTTTCTGATTACAATATCCAAAAAGAGTCCACTCTTCACTTGGTTCTCCGTCTTCGTGGTGGTATCATTGAGCCCTCTTTGAAGGCATTGGCTTCCAAGTACAACTGTGAGAAGCAAATCTGCCGTAAATGCTATGCTCGTCTTCCTCCTCGTGCCACTAACTGCCGTAAGAAGAAATGTGGTCATACCAACCAACTCCGTCCTAAGAAGAAGCTTAAG---
Caenorhabditis_elegans_17554758 ---------------------------------ATGCAAATCTTCGTCAAGACTCTGACGGGTAAGACTATTACCCTCGAAGTCGAGGCTTCCGATACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCAGATCAGCAAAGATTGATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACTCTCTCCGACTACAACATCCAAAAGGAGTCTACTCTCCACTTGGTGCTCCGTCTTCGTGGAGGAATCATCGAGCCATCTCTCCGTCAGCTCGCCCAGAAGTACAACTGCGACAAGCAGATCTGCAGAAAGTGCTATGCTCGTCTCCCACCACGTGCCAGCAACTGCAGAAAGAAGAAGTGCGGACACTCCAGCGAGCTCCGCATCAAGAAGAAGCTGAAG---
Saccharomyces_cerevisiae_6322947 ---------------------------------ATGCAAATCTTCGTTAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACCATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACTCTATCTGACTACAACATCCAAAAGGAATCCACTTTACATTTGGTCTTGAGATTAAGAGGTGGTATCATTGAACCATCTTTGAAAGCCTTGGCTTCCAAATACAACTGTGACAAATCTGTTTGTCGTAAATGTTACGCCAGATTACCACCAAGAGCTACCAACTGTAGAAAGAGAAAGTGTGGTCACACCAACCAATTGCGTCCAAAGAAGAAGTTGAAA---
Drosophila_melanogaster_7295730 ---------------------------------ATGCAGATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCTGACACCATCGAGAATGTCAAGGCTAAGATCCAGGATAAGGAGGGCATTCCCCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAACATTCAGAAGGAGTCCACCCTGCACTTGGTGCTCCGCCTGCGTGGTGGTATCATTGAGCCCTCGCTCAGGATTCTGGCCCAGAAGTACAACTGCGACAAGATGATCTGCCGCAAGTGCTACGCCCGTCTGCATCCTCGTGCCACCAACTGCCGCAAGAAGAAGTGCGGACACACCAACAACCTGCGCCCCAAGAAGAAGTTGAAG---
;
END;
BEGIN SETS;
TAXSET fungi = Saccharomyces_cerevisiae_6322947 Schizosaccharomyces_pombe_19114835;
TAXSET invertebrates = Anopheles_gambiae_agCT55686 Caenorhabditis_elegans_17554758 Drosophila_melanogaster_7295730;
TAXSET plants = Arabidopsis_thaliana_18404062;
TAXSET protists = Plasmodium_falciparum_23619579;
TAXSET vertebrates = Homo_sapiens_4507761;
END;