MEGABLAST 2.2.4 [Aug-26-2002]
Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences",
J Comput Biol 2000; 7(1-2):203-14.
Database: cneoA.nt
4935 sequences; 17,206,226 total letters
Searching.......... done
Query= 503384 11337 bp 2 contigs
(11,337 letters)
Score E
Sequences producing significant alignments: (bits) Value
Contig3700 785 0.0
Contig3997 664 0.0
Contig634 486 e-136
Contig1853 339 1e-91
>Contig3700
Length = 5631
Score = 785 bits (396), Expect = 0.0
Identities = 639/718 (88%), Gaps = 12/718 (1%)
Strand = Plus / Minus
Query: 8723 gacggcagcccaccgcgccaatcaggttcatccaaattcgtcatcctcgggccgaacatt 8782
|||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 4794 gacggcagcccaccacgtcaatcaggttcatccaaatttatcatcctcgggccgaacatt 4735
Query: 8783 ggacagtactttgaagtatcaagctcagaaggatccagctgcagttcttcgccttccact 8842
||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 4734 ggacagtactttgaagtatcaagctcagaaggatccaactgcagttcttctccttccacg 4675
Query: 8843 ccgtcgcattcgcctaaccgtctcaatcatcaacactcatttgacacttctaaaagccgt 8902
|| |||||||||||||||||||||||||||| |||||||||||| |||| || |||||
Sbjct: 4674 ccatcgcattcgcctaaccgtctcaatcatcggcactcatttgacccttccaacggccgt 4615
Query: 8903 tcaccctctccgactgaatgtgacgagattgaccgggtagaatattcatctccagccata 8962
|||| ||||||||| |||||||||||||||||| |||| ||||||||||||| | |||||
Sbjct: 4614 tcacgctctccgaccgaatgtgacgagattgactgggtggaatattcatctctatccata 4555
Query: 8963 gaaatggaagcatgccaaatgtcgggctgggacagtagtgtctccgagttgtcagagggc 9022
| ||||||||||| || ||| || |||||| |||||||||||| || |||||||||||
Sbjct: 4554 gggatggaagcatgtcagatgccgagctgggccagtagtgtctctgaattgtcagagggt 4495
Query: 9023 gactcggagacagagacttccgtgattattacccctgatagagatattcgggat-g--gt 9079
||||| |||||||||| ||||||||||||||| ||||||||||||||||||||| | ||
Sbjct: 4494 gactcagagacagagagttccgtgattattactcctgatagagatattcgggatggtcgt 4435
Query: 9080 caaagtcagcgcttggatatccgggatatcgtaaggtggaaatacgctttgataagcctt 9139
|||||||||||||||||||||| |||||||||||||||| | ||| |||| |||| |||
Sbjct: 4434 caaagtcagcgcttggatatccaggatatcgtaaggtggcagtacaatttggtaagtctt 4375
Query: 9140 gttaaacatatgtttcataggcct-tacttctcaaacagacctccatcaaatctgaacat 9198
||||||||||||||||||||| || |||||||||||||||| ||||||||||||||| |
Sbjct: 4374 gttaaacatatgtttcatagg-ctctacttctcaaacagacttccatcaaatctgaatgt 4316
Query: 9199 ccggctttgagaccgaatcgcttattatcttgccgtacaacttcgagccatacggtggta 9258
| ||||||||||||||||||| |||||| ||| |||||||||||||||||||| ||
Sbjct: 4315 ctggctttgagaccgaatcgc---ctatcttcccgcacaacttcgagccatacggtagtg 4259
Query: 9259 cctcgtgactttaatcgtcgctgtagcgaatcttgctctgttacatc-ggcctcaagctc 9317
||| | |||||||||||||||||||||||| || | |||||| |||| || ||| |||||
Sbjct: 4258 ccttgcgactttaatcgtcgctgtagcgaacctcgttctgttgcatcagg-ctctagctc 4200
Query: 9318 tagttttcatgcccctcagccgggagagttgaa-ccaacatggagatactgtggcttgtg 9376
||||| | ||||||||||| |||||| || |||||||||||||| ||||||||||
Sbjct: 4199 tagttctaatgcccctcagttgggaga-cccaagtcaacatggagataccgtggcttgtg 4141
Query: 9377 aagcttgcggtagaggcacgacaatcactaacgcaaaaaagattatgccttgtcaagt 9434
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 4140 aagcttgcggtagaggcacgaccatcactaacgcaaagaagattatgccttgtcaagt 4083
Score = 753 bits (380), Expect = 0.0
Identities = 541/594 (91%), Gaps = 3/594 (0%)
Strand = Plus / Minus
Query: 10744 taccatatttttctccgttctaccgtattctt-cacatgtatctgcatatcaacgtaaca 10802
||||||| |||||||| || ||||||| | || ||||||||||||| ||| | | || |
Sbjct: 2753 taccatacttttctccattttaccgtactattccacatgtatctgcgtatttatgcaata 2694
Query: 10803 tacaatttccaagatacaacaggaattcaaacaagaaaaatcagatcctcaaccccgcac 10862
||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 2693 tacaatttccaagttacaacaggaatgcaaacaacaaaaatcagatcctcaaccccgcac 2634
Query: 10863 caaacttctttacacagataaggtttacctcatctctcatttgtctccatattctccacc 10922
||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct: 2633 caaacttctttacacagataaggttcacctcatccctcatttgcctccatattctccacc 2574
Query: 10923 attcccttccagcctcactcgcaccctcgtttaacccttcgtcctgtgcccacttt-tct 10981
|||||||||||||||| ||| ||| ||| ||||| ||||| |||||| |||| ||| |||
Sbjct: 2573 attcccttccagcctcgctcacactctcatttaatccttcatcctgtcccca-tttctct 2515
Query: 10982 tttatgatcattctcatccatcgcaacacctcgacgactttctcaactccatccccaacc 11041
|||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 2514 tttatgatcaccctcatccatctcaacacctcgacgactttctcaactccatctccaacc 2455
Query: 11042 ctgccctcgccatcattcaaacattttttgagaaatgcagccactttaatagcatcctta 11101
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 2454 ttgccctcgccatcattcaaacattttttgagaaatgcggccactttagtagcatccttg 2395
Query: 11102 tctgccggcggactatcttctctggactcgatccataattcaatagtcctgagcacatcg 11161
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2394 tctgccggcggactatcttctctggactcgatccataattcaatagttctgagcacatcg 2335
Query: 11162 ggaagctcggtcgagttcatgagagcgggtttgggcggcctgatgatcttgacactctgt 11221
||||||||||| ||||||||||| ||||||||||| ||| | |||||||||||| | |||
Sbjct: 2334 ggaagctcggttgagttcatgagggcgggtttggggggcttaatgatcttgacattttgt 2275
Query: 11222 ctctgctgcggcgggattgaccgtgatgtggagcggcctctgtacgcgccgacacctccc 11281
||||||||||| |||||||||||||||||||| |||||||||||| |||||||| |||||
Sbjct: 2274 ctctgctgcggtgggattgaccgtgatgtggaacggcctctgtacccgccgacaactccc 2215
Query: 11282 aacttgacaggtgagacactggtactcgtccctcttgatctggatctatcccca 11335
|| |||||||| |||||||| |||||||||||||| || ||||||||| |||||
Sbjct: 2214 aatttgacaggagagacactagtactcgtccctctcgacctggatctaccccca 2161
Score = 726 bits (366), Expect = 0.0
Identities = 511/558 (91%), Gaps = 8/558 (1%)
Strand = Plus / Minus
Query: 9759 ctaaagatatcaggacatcactccggccattgttgaggccttccttccgagaaattcgtt 9818
|||| |||||||||||||||||||||||| |||||||||||| |||||||||||||| ||
Sbjct: 3753 ctaatgatatcaggacatcactccggccactgttgaggcctttcttccgagaaattcatt 3694
Query: 9819 atctcaccgtacccttcaaccaatccatattctccttgacagattcgacgggcgtactaa 9878
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 3693 atctcatagtacccttcaaccaatccatattctccttgacagattcgacggacgtacaaa 3634
Query: 9879 ggacta-c--ctg-g-tacgcccccttttaaagtctgctgctgtgctgaatactcgcttc 9933
|||||| | || | || ||| || |||| ||||| ||||||||||| ||||| ||||
Sbjct: 3633 ggactatctggtgtgctatgccgcc-tttagagtctattgctgtgctgattactcacttc 3575
Query: 9934 gaaaacagtatatcgaagccgcgacaccgcaagccgcacaaactatactcaagacctgtc 9993
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 3574 gaaaacagtatatcgaagccgcgacaccgcaagcggcacaaactatactcaagacctgtc 3515
Query: 9994 agaatactttcttgtccggaggagcgctcacttcgggaaggagacggcctgttaccatca 10053
|||||| |||| |||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 3514 agaataatttcatgtccggaggagcgctcacttcgggaaggaaacggcctgttactatca 3455
Query: 10054 ctcccgtatcgcattcggagctcatagaagaactgcgtccacattcggctcaggaactcc 10113
|||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 3454 ctcccgtatctcattcggagctcatagaagaactgcgtccacactcggcccaggaactcc 3395
Query: 10114 attcgctactcgctctttgtcaagctgctatagactcgaattctggatccaaac-aaagt 10172
||||||||||| ||||||||||||||||| | ||||| |||||||||| |||| ||| |
Sbjct: 3394 attcgctactcactctttgtcaagctgctgtggactcaaattctggatgtaaactaaa-t 3336
Query: 10173 acttcaaagtatatcaagtctcgccatgggccatactacgccttgatgtcaacaatgagc 10232
||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||
Sbjct: 3335 acttcaaagtatatcaagtctcgccatggaccatactacgctttgatgtcagcaatgagc 3276
Query: 10233 aaaatgaatggggagcaaagtccctcttactgggacatgttctgtaagtggaatttgagt 10292
||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||
Sbjct: 3275 aaattgaatggggagcaaagtccttcttactgggacatgttctgtaagtgggattcgagc 3216
Query: 10293 atggtcgtagagctcttg 10310
||| ||||||||||||||
Sbjct: 3215 atgatcgtagagctcttg 3198
Score = 400 bits (202), Expect = e-110
Identities = 300/332 (90%), Gaps = 4/332 (1%)
Strand = Plus / Minus
Query: 10338 agacgtcgcctctggtaagaaggactttttggacttttcatcaggtccattatggcattc 10397
||||||||||||||||||||| || |||||| ||||| |||||| |||||||||||| ||
Sbjct: 3169 agacgtcgcctctggtaagaa-gaatttttgaactttccatcagttccattatggcagtc 3111
Query: 10398 gctgaccacttgaccgctgttcgtgatggggctaacaggagccatctccgcattaagtaa 10457
||||||| | |||||| ||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 3110 gctgaccgcatgaccgttgttcgtgacggggctaataggagccatctccgcattaagtaa 3051
Query: 10458 agcaataactcgccaggcctactttcgttcctcacaaggctcccctgctcgctcatatcc 10517
|||||||||||||||| ||||||||| |||||||||| |||| |||||||||||||||||
Sbjct: 3050 agcaataactcgccagacctactttcattcctcacaaagctcgcctgctcgctcatatcc 2991
Query: 10518 c---accgacgccataactcttgtctctgaggaagatctgctcgtacgcaataaattact 10574
| |||||||||| ||||| ||||||||||||||| | || |||||||| ||||||||
Sbjct: 2990 cgccaccgacgccacaactcacgtctctgaggaagatatacttgtacgcaacaaattact 2931
Query: 10575 gatgttgttcgagaagtgttttggtatgatgccaagagctaattaactcagaggatcact 10634
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 2930 gatgttgttcgagaggtgtttcggtatgatgccaagagctaattaactcagaggattact 2871
Query: 10635 atatcatcggggtgtacaggaatttgtacttg 10666
|||||| ||| |||||||||||| |||||||
Sbjct: 2870 gtatcattgggatgtacaggaattcgtacttg 2839
Score = 196 bits (99), Expect = 1e-48
Identities = 112/116 (96%), Gaps = 2/116 (1%)
Strand = Plus / Minus
Query: 8368 gaccgggaacgtacgagggaatggagacggcctttgagagcctgttgatgtagtcgtcct 8427
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 5355 gaccggg-acgtacgagggaatggacacggcctttgagagcctgttgatgtagtcgtcct 5297
Query: 8428 tgtggtcgtcgac-gtactggaggaacttgggatcggccattgctgtgcttgtggg 8482
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 5296 tgtggtcgtcgacagtactggaggaacttgggatcggccattgctgtgtttgtggg 5241
>Contig3997
Length = 12734
Score = 664 bits (335), Expect = 0.0
Identities = 401/423 (94%)
Strand = Plus / Minus
Query: 1282 accttgcgaatgtccaataaacccatcacgacgtcacctctgaccacttccttttcatct 1341
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1968 accttgcgaatgtccaataaacccatgacgacgtcacctctgaccacttccttttcatct 1909
Query: 1342 gttccaaccaccagcgccctccccacaaaactccttcccggcacatacttgcccacatcc 1401
|| || |||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 1908 gtaccgaccaccagcgccctgcccacaaaactccttccaggcacatacttgcccacatcc 1849
Query: 1402 cctcttcccttttcgtccacggcacgtacatccacttgatccaccgcaacagcataaacc 1461
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 1848 cctcttcccttttcgtccacggcacgtacatccacttgatccaccgccacggcataaacc 1789
Query: 1462 tgtacgagcacttggttctttcccgtctttcctgggggttttgagtgagagctaaactct 1521
||||||||||||||||||||||||||||| || || |||||||||||||| |||||||||
Sbjct: 1788 tgtacgagcacttggttctttcccgtcttaccaggaggttttgagtgagaactaaactct 1729
Query: 1522 acaaggggcgggagctggtcacggaggtgtgcgggggtagcgttgtggtggtcaaatgtg 1581
||||||||||||||||||||||| |||||||||||||||||||| ||||| || ||||||
Sbjct: 1728 acaaggggcgggagctggtcacgaaggtgtgcgggggtagcgttatggtgatcgaatgtg 1669
Query: 1582 gaatggagtgtgatggatgccatggtggcgtgtggaagaccaaggatacgtgcgtctagg 1641
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 1668 gaatggagtgtgatggatgccatgctggcgtgtggaagaccaaggatacgggcgtctagg 1609
Query: 1642 tcgggcgctgatttggccgggtttgactgtttgtaagcgcccagaggtaaaatcaagttg 1701
|| || |||||||| ||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 1608 tcaggtgctgatttagccgggtttgattgtttgtaagcgcccaaaggtaaaatcaagttg 1549
Query: 1702 cta 1704
|||
Sbjct: 1548 cta 1546
Score = 648 bits (327), Expect = 0.0
Identities = 412/440 (93%), Gaps = 2/440 (0%)
Strand = Plus / Minus
Query: 767 actcactttccgccactcttcaatgctctttttgcagtgtcatacaccctttgcccaccc 826
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 2498 actcactttccgccactcttcaatgctcttcgtgcagtgtcatacacccgttgcccacct 2439
Query: 827 tgggtgtcaaacacaaagtcatacccattttcctccagattgatcatcactgccgccgga 886
|| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2438 tgcgtatcaaacacaaagtcatatccattttcctccagattgatcatcactgccgccggc 2379
Query: 887 gaacccatgagcactcccttggccccattctcaatacacttt-tggtgagcctcatgcga 945
||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||
Sbjct: 2378 gaacccatgagcactcccttggccccattttcaataca-tttctggtgagcctcatgcga 2320
Query: 946 gtcgtccccaccggggacgatagccgtcacgtatacacctgcgcgggacatgacctgaca 1005
||||||||| || |||| |||||||||||| || ||||||||||| ||||| ||||| ||
Sbjct: 2319 gtcgtccccgccagggatgatagccgtcacatagacacctgcgcgagacatcacctggca 2260
Query: 1006 gacgagtgcggcgataccagtatgggcgttgatgataatggcgcggaactggcgattgag 1065
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 2259 gacgagtgcggcgataccagtatgggcgttgatgacgatggcgcggaattggcgattgag 2200
Query: 1066 agagccacgaacgcatcgcgctgcagcgatgccttggagagggagaatcgagagttgttc 1125
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2199 agagccacggacgcatcgcgctgcagcgatgccttggagagggagaatagagagttgttc 2140
Query: 1126 gagtgtgagaagggtagggaatggtgctcgagagacacgtcgacggtcgacaagaatgta 1185
||||||||||||||||||||||||||| ||||| ||||||||||| || |||||||||||
Sbjct: 2139 gagtgtgagaagggtagggaatggtgcacgagaaacacgtcgacgatccacaagaatgta 2080
Query: 1186 ctctgccaatgcgccgctct 1205
||||||||||||||||||||
Sbjct: 2079 ctctgccaatgcgccgctct 2060
Score = 563 bits (284), Expect = e-159
Identities = 351/373 (94%), Gaps = 1/373 (0%)
Strand = Plus / Minus
Query: 351 aaaaagcagaacactagttgataatcctcacgaccctcacgccacactcatcccatcctt 410
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2931 aaaaagcag-acactaattgataatcctcacgaccctcacgccacactcatcccatcctt 2873
Query: 411 ggcgtttaaagacatctgctcccctttcaaagggcaccactgcgttctcaccttccagca 470
| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 2872 gacgtttaaagacctctgctcccctttcaaagggcaccactgcgctctcaccttccaaca 2813
Query: 471 ctggcctaaaggatgccatacacggttcctccatcacatcgcggcaatccatcccggatg 530
|||| ||||||| ||||||||||||||||||||||||||| ||||| ||||||||||| |
Sbjct: 2812 ctggtctaaaggttgccatacacggttcctccatcacatcacggcagtccatcccggacg 2753
Query: 531 cgtcaatctctggctcaccagacccgatgggagagacgtattcaaaggcgataaactttg 590
||||||||||||||||||||||||| ||||| ||||| |||||||||| |||||||||||
Sbjct: 2752 cgtcaatctctggctcaccagacccaatgggggagacatattcaaaggagataaactttg 2693
Query: 591 agtctttgcgttttgaaccaaacactgttctcagtgtcttgatgcccgacgggcgggaag 650
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 2692 aatctttgcgttttgaaccaaacactgttctcagtgtcttgatgccggacgggcgggaag 2633
Query: 651 ccaagtggggcgggacgcggttcagagttgtttcggggcgcttggtcgataccaatctac 710
|||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 2632 ccaaatggggcgggacgcggttcagagttgcttcgggccgcttggtcgataccaatctac 2573
Query: 711 agaatgcacattt 723
| ||| |||||||
Sbjct: 2572 aaaatacacattt 2560
Score = 299 bits (151), Expect = 1e-79
Identities = 214/234 (91%), Gaps = 5/234 (2%)
Strand = Plus / Minus
Query: 4 ttgatagatctccagtcatagggcctctagtccggcgcacaagaagtgcaaggtttttag 63
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 3284 ttgatagatctccagtcatagggcctctggtccggcgcacaagaagtgcaaggtttttag 3225
Query: 64 ggcgaagctggggtagttctacagggagagaagttgatggggaagcagagctcgggcaag 123
|||||||||||| ||||||| |||| ||||||||||||||||||||||||| ||||| |
Sbjct: 3224 ggcgaagctgggatagttctgtagggggagaagttgatggggaagcagagctggggcagg 3165
Query: 124 cgggcagtagtatcggacgagattggtgtacaagagagatggatgaaggg-tatgggacg 182
||||| ||||| ||||||||| | |||||||||||||||||||||| ||| ||||||||
Sbjct: 3164 cgggcggtagtgtcggacgaggtcggtgtacaagagagatggatga-gggatatgggact 3106
Query: 183 tttaatgattgatgac-att-gtatcgattttgtacaagtatcttg-gactgtt 233
||||||||||||| | ||| ||| ||||||||||||||||||||| |||||||
Sbjct: 3105 tttaatgattgattaagatttgtaacgattttgtacaagtatcttgagactgtt 3052
Score = 293 bits (148), Expect = 7e-78
Identities = 179/189 (94%), Gaps = 2/189 (1%)
Strand = Plus / Minus
Query: 1755 actcacgtgtacccaggagcactttcttgatcccttccatgcgattccatcaacatc-cc 1813
||||||||||||||||||||||| |||||||||||||||||||| |||||||||| | ||
Sbjct: 1502 actcacgtgtacccaggagcactctcttgatcccttccatgcgactccatcaaca-cacc 1444
Query: 1814 atcaccatacgaactcccttcccactttgacccgcctgtaaatctatacccagcagcgct 1873
||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 1443 atcaccatacgaactcccttcccactttgacccgcctccaaacctatacccagcagcgct 1384
Query: 1874 cttcgacctcttgatcatggacggtaaaggcaattcagccaatccatcatctttttcgcc 1933
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 1383 ctttgacctcttgatcatggacggtaaaggcaattcagccaatccatcatcttcttcccc 1324
Query: 1934 tgcctcact 1942
|||||||||
Sbjct: 1323 tgcctcact 1315
Score = 252 bits (127), Expect = 2e-65
Identities = 220/250 (88%), Gaps = 6/250 (2%)
Strand = Plus / Minus
Query: 1969 gaccgtggccgacttcgctcctcgagcctctaaagatgctagactttctcgaatgcgaca 2028
|||||||||| ||||| ||| |||||||||| || | ||||||| || ||||||||||||
Sbjct: 1279 gaccgtggcccacttcactcttcgagcctctgaatacgctagaccttgtcgaatgcgaca 1220
Query: 2029 aatgtcctcctccattatcgtggtacatggataaccttgagcggctcctctcgggagggg 2088
| || | || ||||||||||| |||| ||||||||| ||||| |||||||||||||| |
Sbjct: 1219 actg--c-ccaccattatcgtgatacacggataacctcgagcgactcctctcgggaggtg 1163
Query: 2089 gtgaaga---gcgatagagacgttcagagtcttggggggtcatctctggaaggatggtga 2145
||||||| |||||||||||||||||||||||| || ||||| ||||||||||||||||
Sbjct: 1162 gtgaagaggggcgatagagacgttcagagtcttgcggcgtcatttctggaaggatggtga 1103
Query: 2146 ggatgtcggggtccaggaaggaaggcggttcaaaccctgcccgcggagttgttggacgtg 2205
|||||||||||||||||||||| || ||||| ||||||||||| || |||||||| ||||
Sbjct: 1102 ggatgtcggggtccaggaaggaggggggttcgaaccctgcccggggggttgttgggcgtg 1043
Query: 2206 tagggatagg 2215
||||||||||
Sbjct: 1042 tagggatagg 1033
Score = 143 bits (72), Expect = 1e-32
Identities = 90/96 (93%)
Strand = Plus / Minus
Query: 2279 tgagggagatgtaggacgagagtattgagagagacggccaggtgatgacgatgatggggg 2338
|||||||||||||||||||||||||||||||||||| | ||| |||||| |||| |||||
Sbjct: 960 tgagggagatgtaggacgagagtattgagagagacgacaaggcgatgacaatgacggggg 901
Query: 2339 taaaggcgatggggtccttggcggatagacgggagc 2374
|||||||||||||||||||||||| |||||||||||
Sbjct: 900 taaaggcgatggggtccttggcgggtagacgggagc 865
Score = 121 bits (61), Expect = 5e-26
Identities = 142/168 (84%), Gaps = 5/168 (2%)
Strand = Plus / Minus
Query: 3164 ttcgtcatctgagcctgcttggcctgatgcactctccatatcctcgtcgtcctttgaagg 3223
|||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| | |||
Sbjct: 165 ttcgtcgtctgagcctgcttggcctgatgcactctccatatcgtcgtcatccttgggagg 106
Query: 3224 aagaggcggcggctgttccg-ccgtgttgcgaggggggttgattactctaggtgcaagag 3282
|||||| || || | |||| || |||||||||||||| |||| || ||| |||| || |
Sbjct: 105 aagaggtggaggtt-ttcccaccatgttgcgaggggggatgatcaccctaagtgccag-g 48
Query: 3283 -tgggacgagaggtggtatgcggtaggtggtcgggatggagggcggat 3329
|||| | ||||||||||| |||||| ||||| ||||| |||| ||||
Sbjct: 47 ctggggccagaggtggtat-cggtagatggtctggatgaagggaggat 1
Score = 103 bits (52), Expect = 1e-20
Identities = 70/76 (92%)
Strand = Plus / Minus
Query: 3041 gtgcgaacgccgcgacgaggagcgaatggactgtgctctgctacaaggccgggaagacga 3100
|||||| |||||||| |||||||||||||||||||||||||||||||||| ||| || ||
Sbjct: 273 gtgcgagcgccgcgatgaggagcgaatggactgtgctctgctacaaggcctggaggaaga 214
Query: 3101 tttgggagtgcgtgag 3116
||||||||||| ||||
Sbjct: 213 tttgggagtgcatgag 198
>Contig634
Length = 858
Score = 486 bits (245), Expect = e-136
Identities = 304/323 (94%), Gaps = 3/323 (0%)
Strand = Plus / Minus
Query: 7620 tatatatatacgtaccagaaatacacatgcagtcaacaccggcgaaaaacttgtcctttt 7679
||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 321 tatatat-tacgtaccagaaatgcacatgcagtcaacaccggcgaagaacttgtcctttt 263
Query: 7680 cagattcaataaacttgtccaggttgacagaaccattctcctccataccctcaaaacaga 7739
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cagattcaataaacttgtcaaggttgacagaaccattctcctccataccctcaaaacaga 203
Query: 7740 ctttgaggttgacaggaagctcgataccaagcttcttgtgcgcctcgaggacgtttaacc 7799
||||||| |||||||||||||| |||||||||||||| ||||||||||| ||||| ||||
Sbjct: 202 ctttgagattgacaggaagctcaataccaagcttcttatgcgcctcgagaacgttcaacc 143
Query: 7800 agcccatgactggacccttgtcatcggttgagccacggccgtaaagtcggccactgccgt 7859
|||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 142 agcccatgacaggacccttgtcatccgttgagccacggccgtagagtcggccactgccgt 83
Query: 7860 tgggatcgggggtgagctcaaagggagggtagagccagccgtcttcgagtaga-gcgggt 7918
||||||| |||||||||||||| |||||||||||||||||||||||||| | | ||||||
Sbjct: 82 tgggatccggggtgagctcaaacggagggtagagccagccgtcttcgagca-atgcgggt 24
Query: 7919 tggacatcgtagtggccatagac 7941
||||| ||||||||||| |||||
Sbjct: 23 tggacgtcgtagtggccgtagac 1
Score = 291 bits (147), Expect = 3e-77
Identities = 162/167 (97%)
Strand = Plus / Minus
Query: 7410 cttactgagagcgataagatccgtcatcggttcgtggacggtaccgccaaagacaccaga 7469
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 cttactgagagcgacaaggtccgtcatcggttcgtggacggtaccgccaaagacaccaga 481
Query: 7470 gtgaagatccctgtcaggcccagaaatcttgatctcgtaatagttgatacctctgagacc 7529
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gtggagatccctgtcaggcccagaaatcttgatctcgtaatagttgatacctctgagacc 421
Query: 7530 ataagtgagacagggggtcttggtgtcaagccagtaattgtctatat 7576
|||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 420 ataagtgagacacggggtcttggtgtcaagccagtagttgtctatat 374
Score = 224 bits (113), Expect = 5e-57
Identities = 183/206 (88%), Gaps = 2/206 (0%)
Strand = Plus / Minus
Query: 7180 aaacccacagtcgtaacagtgtcgtcggagatggtgacctcaccaccaacagc-ggcatg 7238
|||| ||||||| |||| || ||| | || |||||||| |||||||| ||||| |||||
Sbjct: 783 aaactcacagtcttaacggtatcgcccgatatggtgacttcaccaccgacagcatgcatg 724
Query: 7239 aatatcttccatctggaagtggatagcctcaaacttggctcgctcatcgtcggtgacagg 7298
|||||||| ||||| ||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 723 aatatcttgcatctcgaaatggatagcttcaaacttggctcgctcatcgtcggtgacagg 664
Query: 7299 cgcgatgaggtccttgataccggtaacgaggatctggccgtcgggagtgacaagcttgga 7358
|||||||||||||||| |||| ||||||||||||||||||||||||| |||||| ||||
Sbjct: 663 ggcgatgaggtccttgacaccgctaacgaggatctggccgtcgggagtaacaagcctgga 604
Query: 7359 cactatatataacactcgtcagctct 7384
||||| ||| |||||| |||||||||
Sbjct: 603 cactagata-aacacttgtcagctct 579
>Contig1853
Length = 2314
Score = 339 bits (171), Expect = 1e-91
Identities = 204/215 (94%)
Strand = Plus / Plus
Query: 6406 aaatactcactcggatgtagttgtcagtgtcaatcttctcgttggtggaatgagctccgt 6465
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1691 aaatacgcactcggatgtagttgtcagtgtcaatcttctcgttggtggaatgagctccgt 1750
Query: 6466 catcaccccttccgacaggtaacaaaaggacgttgaggttgagaatgttggcaaagtcga 6525
||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||
Sbjct: 1751 catcaccccttccgacaggcaacaggaggacattgaggttgagaatgttggcaaagtcga 1810
Query: 6526 gggtgacagggatagaaccgccttcacgggtgtagtcgggcacttggccgtaaacagact 6585
| ||||||||||| |||||||||||||||||||| || |||||||||||||||||||| |
Sbjct: 1811 gagtgacagggatggaaccgccttcacgggtgtaatcaggcacttggccgtaaacagatt 1870
Query: 6586 cggtagccttgtgcgccgctcgataagagtagtgc 6620
||||||||||||||||||| |||||||||||||||
Sbjct: 1871 cggtagccttgtgcgccgcacgataagagtagtgc 1905
Score = 285 bits (144), Expect = 2e-75
Identities = 243/274 (88%), Gaps = 11/274 (4%)
Strand = Plus / Plus
Query: 6630 ggtcagtctttatcatccacttgcatt-gttgccaaccgtgctcacattggggtcagcct 6688
||||||||||||| || |||||||||| || |||| | ||||||| |||||||||||||
Sbjct: 1933 ggtcagtctttat-at-cacttgcattattttccaatcatgctcacgttggggtcagcct 1990
Query: 6689 gaaag-aaaacgattgtcagcc---tctttacattcatcaa-cactcgccgggggcataa 6743
||||| ||||| |||||||||| | |||||||||||||| || || || |||| | |
Sbjct: 1991 gaaagcaaaaccattgtcagccttttttttacattcatcaacca-tc-cc-ggggaacca 2047
Query: 6744 ctcacaatccaaggctcaccaccgtgagtgagatacacctccatcttgttcttggaacca 6803
|||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct: 2048 ctcacaatccaaggctcaccgccatgagtaagatacacctccatcttgttcttggaacca 2107
Query: 6804 agttttttgaattcttcctcaacgtacttgacgacgaggtcagtcacactggcaacagtg 6863
||||| ||||| ||||||||||||||||||||||| ||||| || || ||||| ||||||
Sbjct: 2108 agtttcttgaactcttcctcaacgtacttgacgacaaggtcggtgacgctggcgacagtg 2167
Query: 6864 aggttgggtacaagacggatagagaatttgccta 6897
||||||||||||||||||||||||||||||||||
Sbjct: 2168 aggttgggtacaagacggatagagaatttgccta 2201
Score = 71.9 bits (36), Expect = 5e-11
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 6963 acccttgacacagcagggaatcacagtcttggaacc 6998
||||||||||||||||||||||||||||||||||||
Sbjct: 2277 acccttgacacagcagggaatcacagtcttggaacc 2312
Database: cneoA.nt
Posted date: Dec 12, 2002 3:26 PM
Number of letters in database: 17,206,226
Number of sequences in database: 4935
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 0, Extension: 0
Number of Hits to DB: 9213
Number of Sequences: 4935
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 1.0e-01: 4
length of query: 11337
length of database: 17,206,226
effective HSP length: 19
effective length of query: 11318
effective length of database: 17,112,461
effective search space: 193678833598
effective search space used: 0
S2: 21 (42.1 bits)