LOCUS AF222649rc 1659 bp RNA linear VRL 10-JAN-2001
DEFINITION Influenza A virus (A/Quail/Hong Kong/NT28/99(H9N2)) segment 3 PA
(PA) gene, partial cds.
ACCESSION AF222649rc
VERSION AF222649rc.1
KEYWORDS .
SOURCE Influenza A virus (A/Quail/Hong Kong/NT28/99(H9N2))
ORGANISM Influenza A virus (A/Quail/Hong Kong/NT28/99(H9N2))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1659)
AUTHORS Guan,Y., Shortridge,K.F., Krauss,S., Chin,P.S., Dyrting,K.C.,
Ellis,T.M., Webster,R.G. and Peiris,M.
TITLE H9N2 influenza viruses possessing H5N1-like internal genomes
continue to circulate in poultry in southeastern China
JOURNAL J. Virol. 74 (20), 9372-9380 (2000)
PUBMED 11000205
REFERENCE 2 (bases 1 to 1659)
AUTHORS Guan,Y., Krauss,S., Webster,R.G. and Shortridge,K.F.
TITLE Direct Submission
JOURNAL Submitted (10-JAN-2000) Virology and Molecular Biology, St. Jude
Children's Research Hospital, 332 N. Lauderdale, Memphis, TN 38105,
USA
FEATURES Location/Qualifiers
source complement(1..1659)
/organism="Influenza A virus (A/Quail/Hong
Kong/NT28/99(H9N2))"
/mol_type="genomic RNA"
/strain="A/Quail/Hong Kong/NT28/99(H9N2)"
/db_xref="taxon:109241"
/segment="3"
gene complement(1..1653)
/gene="PA"
CDS complement(1..1653)
/gene="PA"
/codon_start=1
/product="PA"
/protein_id="AAG48207.1"
/db_xref="GI:12060686"
/translation="MEDFVRQCFSPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEV
CFMYSDFHFIDERGESIIVEFGDPNVLLKHRFEIIEGRDRTMAWTVVNSICNTTGVEK
PKYLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSERTHIHIFSFTGEEMATKAD
YTLDEESRARIKTRLFTIRQELASRGLWDSFRQSERGEETIEERFEITGTMRRLADQS
LPPNFSSLENFRAYVDGFEPNGCIEGKLSQMSKEVTARIEPFLKTTPRPLKLPDGPPC
SQRSKFLLMDALKLSIEDPSHEGEGIPLYDAIKCMKTFFGWKEPKIIKPHEKGINPNY
LLAWKQVLAELQDIENDEKIPKTKNMKKTSQLKWALGENMAPEKVDFEDCKDVGDLKQ
YDSDEPELKSLASWIQSEFNKACELTDSSWVELDEIGEDVAPIEHIASMRRNYFTAEV
SHCRATEYIMKGVYINTALLNASCAAMDDFQLIPMVSKCRTKEGRRKTNLYGFIIKGR
SHLRNDTDVVNFVSMEFSLTDPRLEPHKWEKYCVLEVGDMLLR"
misc_feature complement(4..1593)
/gene="PA"
/note="Influenza RNA-dependent RNA polymerase subunit PA;
Region: Flu_PA; pfam00603"
/db_xref="CDD:144261"
gene complement(join(1081..1653,894..1079))
/gene="PA-X"
CDS complement(join(1081..1653,894..1079))
/gene="PA-X"
/product="PA-X"
/codon_start=1
BASE COUNT 374 a 412 c 312 g 561 t
ORIGIN
1 tctcaggagc atgtccccta cttcaagaac acagtacttc tcccacttgt gtggctccaa
61 tctcgggtct gtaagagaaa attccatgct cacaaagttt accacatcag tatcattcct
121 caaatgggac cttcccttga taatgaaccc atacaggttt gttttccgtc tcccttcttt
181 tgttctgcat ttgcttacca ttgggatcaa ttggaagtca tccatggctg cacaagatgc
241 attgagcaac gctgtattga tatacactcc cttcattata tactcagtag cccggcaatg
301 tgacacttct gctgtgaagt aattccttct catactcgca atgtgctcga ttggggcaac
361 atcttctcct atttcatcaa gttctaccca gcttgaatcg gtcagttcac atgccttgtt
421 aaattcactc tggatccaac ttgctagcga tttgagctct ggttcatcac tatcatattg
481 tttcaggtca ccaacgtctt tgcagtcctc aaagtccact ttctccggtg ccatattctc
541 acctaatgcc cattttaatt ggcttgtttt cttcatgttc ttcgtttttg ggatcttttc
601 atcattttca atgtcctgga gctctgccag cacctgcttc caagctaaga gataatttgg
661 gtttataccc ttctcatgtg gtttgataat tttgggctct ttccagccga aaaatgtttt
721 catgcatttg atcgcatcat acagcggtat cccctctccc tcatgactcg ggtcctcaat
781 gcttaatttc aaagcatcca tcagtaagaa ttttgacctt tgggaacagg gaggtccatc
841 aggcaatttt agaggacgtg gtgttgtttt aagaaagggc tcaattctgg ccgttacctc
901 ttttgacatc tgagaaagct tgccctcaat gcagccgttc ggttcgaatc catccacata
961 ggctctaaag ttttcaaggc tggagaaatt cggtgggaga ctttggtcgg caagcctgcg
1021 cattgttcct gtgatttcaa atctttcttc aattgtctct tcgcctctct cggactgacg
1081 aaaggaatcc catagacccc tgctagccag ttcctgtctt atggtgaaca gcctagtttt
1141 gatccttgcc ctgctctctt catcaagggt atagtccgcc ttggtggcca tttcttcccc
1201 agtaaatgaa aagatgtgaa tgtgtgttct ctcggatttt atcttgttgg ccttttctag
1261 atagtatatg tgcacttccc tccgtgtcac tccaatctca atgaatcgat tctccttgta
1321 atcatacaga tctggaaggt atttaggttt ttcgactccc gtagtgttac agatgctatt
1381 cactactgtc catgccattg ttcggtctct tccttcaatt atttcaaatc ggtgtttcaa
1441 taacacattt ggatcaccaa attccacaat tattgattcg cctctttcgt caatgaagtg
1501 gaaatctgaa tacatgaagc agacttccag atgagtgcat attgccgcaa acttgttcgt
1561 ttcgattttc gggtcttccc cgtactcttt cattgccttt tccgcaagct cgacgatcat
1621 tgggctgaag cattgtcgca caaagtcttc cattttgaa
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