Query= Escherichia coli K-12 MG1655 section 1 of 400 of the complete
genome
(720 letters)
>gi|1786181|gb|AE000111.1|AE000111 Escherichia coli K-12 MG1655
section 1 of 400 of the complete genome
Length = 720
Score = 515 bits (1118), Expect = e-151
Identities = 229/240 (95%), Positives = 229/240 (95%)
Frame = +1 / +1
Query: 1 SFSF*LQRAICLCVD*KKSV**QLLNWLPAVSKLKFY*LRSLNTLTNIGIAHRQIKITEY 180
SFSF*LQRAICLCVD*KKSV**QLLNWLPAVSKLKFY*LRSLNTLTNIGIAHRQIKITEY
Sbjct: 1 SFSF*LQRAICLCVD*KKSV**QLLNWLPAVSKLKFY*LRSLNTLTNIGIAHRQIKITEY 180
Query: 181 TTSMKRISXXXXXXXXXXXGNGAG*RVQETQKKART*QCGLFFSTKGNEVTTMRVLKFGG 360
TTSMKRIS GNGAG*RVQETQKKART*QCGLFFSTKGNEVTTMRVLKFGG
Sbjct: 181 TTSMKRISTTITTTITITTGNGAG*RVQETQKKART*QCGLFFSTKGNEVTTMRVLKFGG 360
Query: 361 TSVANAERFLRVADILESNARQGQVATVLSAPAKITNHLVAMIEKTISGQDALPNISDAE 540
TSVANAERFLRVADILESNARQGQVATVLSAPAKITNHLVAMIEKTISGQDALPNISDAE
Sbjct: 361 TSVANAERFLRVADILESNARQGQVATVLSAPAKITNHLVAMIEKTISGQDALPNISDAE 540
Query: 541 RIFAELLTGLAAAQPGFPLAQLKTFVDQEFAQIKHVLHGISLLGQCPDSINAALICRGEK 720
RIFAELLTGLAAAQPGFPLAQLKTFVDQEFAQIKHVLHGISLLGQCPDSINAALICRGEK
Sbjct: 541 RIFAELLTGLAAAQPGFPLAQLKTFVDQEFAQIKHVLHGISLLGQCPDSINAALICRGEK 720
Score = 508 bits (1103), Expect = e-149
Identities = 218/240 (90%), Positives = 218/240 (90%)
Frame = -1 / -1
Query: 720 FLATANQRSVDAIRALPQQTNAMQDMFYLGKFLIDESFQLRQREPRLGGGESRQKFGKNT 541
FLATANQRSVDAIRALPQQTNAMQDMFYLGKFLIDESFQLRQREPRLGGGESRQKFGKNT
Sbjct: 720 FLATANQRSVDAIRALPQQTNAMQDMFYLGKFLIDESFQLRQREPRLGGGESRQKFGKNT 541
Query: 540 FGIADIG*SILAANGFFNHRHQVVXXXXXXXXXXGHLPLPGIAFQNIGNTQKTFCICH*C 361
FGIADIG*SILAANGFFNHRHQVV GHLPLPGIAFQNIGNTQKTFCICH*C
Sbjct: 540 FGIADIG*SILAANGFFNHRHQVVGDFGGGREDGGHLPLPGIAFQNIGNTQKTFCICH*C 361
Query: 360 TAELQHSHGCYLVTFGRKKKPALSGAGFFLCFLYASARTVTCXXXXXXXXXXXXAFHGCC 181
TAELQHSHGCYLVTFGRKKKPALSGAGFFLCFLYASARTVTC AFHGCC
Sbjct: 360 TAELQHSHGCYLVTFGRKKKPALSGAGFFLCFLYASARTVTCGNGDGGGNGGANAFHGCC 181
Query: 180 VLCNFYLSVRYAYIG*SI**PKSIKF*FTHGR*PVQKLLSDTLFLIHTETYCPLQSE*KA 1
VLCNFYLSVRYAYIG*SI**PKSIKF*FTHGR*PVQKLLSDTLFLIHTETYCPLQSE*KA
Sbjct: 180 VLCNFYLSVRYAYIG*SI**PKSIKF*FTHGR*PVQKLLSDTLFLIHTETYCPLQSE*KA 1
Score = 416 bits (902), Expect(2) = e-160
Identities = 161/161 (100%), Positives = 161/161 (100%)
Frame = +3 / +3
Query: 237 R*RCGLTRTGNTEKSPHLTVRAFFFDQR*RGNNHASVEVRRYISGKCRTFSACCRYSGKQ 416
R*RCGLTRTGNTEKSPHLTVRAFFFDQR*RGNNHASVEVRRYISGKCRTFSACCRYSGKQ
Sbjct: 237 R*RCGLTRTGNTEKSPHLTVRAFFFDQR*RGNNHASVEVRRYISGKCRTFSACCRYSGKQ 416
Query: 417 CQAGAGGHRPLCPRQNHQPPGGDD*KNH*RPGCFTQYQRCRTYFCRTFDGTRRRPAGVPA 596
CQAGAGGHRPLCPRQNHQPPGGDD*KNH*RPGCFTQYQRCRTYFCRTFDGTRRRPAGVPA
Sbjct: 417 CQAGAGGHRPLCPRQNHQPPGGDD*KNH*RPGCFTQYQRCRTYFCRTFDGTRRRPAGVPA 596
Query: 597 GAIENFRRSGICPNKTCPAWH*FVGAVPG*HQRCADLPWRE 719
GAIENFRRSGICPNKTCPAWH*FVGAVPG*HQRCADLPWRE
Sbjct: 597 GAIENFRRSGICPNKTCPAWH*FVGAVPG*HQRCADLPWRE 719
Score = 389 bits (843), Expect(2) = e-153
Identities = 161/161 (100%), Positives = 161/161 (100%)
Frame = -2 / -2
Query: 719 FSPRQISAALMLSGHCPNKLMPCRTCFIWANS*STKVFNCASGNPGWAAASPVKSSAKIR 540
FSPRQISAALMLSGHCPNKLMPCRTCFIWANS*STKVFNCASGNPGWAAASPVKSSAKIR
Sbjct: 719 FSPRQISAALMLSGHCPNKLMPCRTCFIWANS*STKVFNCASGNPGWAAASPVKSSAKIR 540
Query: 539 SASLILGKASWPLMVFSIIATRWLVILAGAERTVATCPCLALLSRISATRRKRSAFATDV 360
SASLILGKASWPLMVFSIIATRWLVILAGAERTVATCPCLALLSRISATRRKRSAFATDV
Sbjct: 539 SASLILGKASWPLMVFSIIATRWLVILAGAERTVATCPCLALLSRISATRRKRSAFATDV 360
Query: 359 PPNFNTRMVVTSLPLVEKKSPHCQVRAFFCVSCTRQPAPLP 237
PPNFNTRMVVTSLPLVEKKSPHCQVRAFFCVSCTRQPAPLP
Sbjct: 359 PPNFNTRMVVTSLPLVEKKSPHCQVRAFFCVSCTRQPAPLP 237
Score = 326 bits (706), Expect(2) = e-129
Identities = 138/161 (85%), Positives = 138/161 (85%)
Frame = +2 / +2
Query: 236 QVTVRADAYRKHRKKPAPDSAGFFFRPKVTR*QPCEC*SSAVHQWQMQNVFCVLPIFWKA 415
QVTVRADAYRKHRKKPAPDSAGFFFRPKVTR*QPCEC*SSAVHQWQMQNVFCVLPIFWKA
Sbjct: 236 QVTVRADAYRKHRKKPAPDSAGFFFRPKVTR*QPCEC*SSAVHQWQMQNVFCVLPIFWKA 415
Query: 416 MPGRGRWXXXXXXXXXXXTTWWR*LKKPLAARMLYPISAMPNVFLPNFXXXXXXXXXXXX 595
MPGRGRW TTWWR*LKKPLAARMLYPISAMPNVFLPNF
Sbjct: 416 MPGRGRWPPSSLPPPKSPTTWWR*LKKPLAARMLYPISAMPNVFLPNF*RDSPPPSRGSR 595
Query: 596 WRN*KLSSIRNLPK*NMSCMALVCWGSARIASTLR*FAVAR 718
WRN*KLSSIRNLPK*NMSCMALVCWGSARIASTLR*FAVAR
Sbjct: 596 WRN*KLSSIRNLPK*NMSCMALVCWGSARIASTLR*FAVAR 718
Score = 198 bits (427), Expect(3) = e-136
Identities = 79/79 (100%), Positives = 79/79 (100%)
Frame = -3 / -3
Query: 718 SRHGKSAQR*CYPGTAPTN*CHAGHVLFGQIPDRRKFSIAPAGTPAGRRRVPSKVRQKYV 539
SRHGKSAQR*CYPGTAPTN*CHAGHVLFGQIPDRRKFSIAPAGTPAGRRRVPSKVRQKYV
Sbjct: 718 SRHGKSAQR*CYPGTAPTN*CHAGHVLFGQIPDRRKFSIAPAGTPAGRRRVPSKVRQKYV 539
Query: 538 RHR*YWVKHPGR*WFFQSS 482
RHR*YWVKHPGR*WFFQSS
Sbjct: 538 RHR*YWVKHPGR*WFFQSS 482
Score = 170 bits (365), Expect(3) = e-136
Identities = 65/65 (100%), Positives = 65/65 (100%)
Frame = -3 / -3
Query: 430 APAWHCFPEYRQHAENVLHLPLMYRRTSTLAWLLPRYLWSKKKARTVRCGLFSVFPVRVS 251
APAWHCFPEYRQHAENVLHLPLMYRRTSTLAWLLPRYLWSKKKARTVRCGLFSVFPVRVS
Sbjct: 430 APAWHCFPEYRQHAENVLHLPLMYRRTSTLAWLLPRYLWSKKKARTVRCGLFSVFPVRVS 251
Query: 250 PHRYL 236
PHRYL
Sbjct: 250 PHRYL 236
Score = 155 bits (332), Expect(2) = e-153
Identities = 65/65 (100%), Positives = 65/65 (100%)
Frame = -3 / -3
Query: 196 VSWMLCTL*FLSVCALCLYWLKYLVT*VNKILIYSRQVTSSEAAIRHSFFNPHRDILPVA 17
VSWMLCTL*FLSVCALCLYWLKYLVT*VNKILIYSRQVTSSEAAIRHSFFNPHRDILPVA
Sbjct: 196 VSWMLCTL*FLSVCALCLYWLKYLVT*VNKILIYSRQVTSSEAAIRHSFFNPHRDILPVA 17
Query: 16 VRMKS 2
VRMKS
Sbjct: 16 VRMKS 2
Score = 154 bits (330), Expect(2) = e-160
Identities = 65/65 (100%), Positives = 65/65 (100%)
Frame = +3 / +3
Query: 3 LFILTATGNMSLCGLKKECLIAASELVTCRE*IKILLT*VTKYFNQYRHSAQTDKNYRVH 182
LFILTATGNMSLCGLKKECLIAASELVTCRE*IKILLT*VTKYFNQYRHSAQTDKNYRVH
Sbjct: 3 LFILTATGNMSLCGLKKECLIAASELVTCRE*IKILLT*VTKYFNQYRHSAQTDKNYRVH 182
Query: 183 NIHET 197
NIHET
Sbjct: 183 NIHET 197
Score = 141 bits (302), Expect(3) = e-136
Identities = 59/59 (100%), Positives = 59/59 (100%)
Frame = -2 / -2
Query: 179 YSVIFICLCAMPILVKVFSDLSQ*NFNLLTAGNQFRSCYQTLFF*STQRHIARCSQNEK 3
YSVIFICLCAMPILVKVFSDLSQ*NFNLLTAGNQFRSCYQTLFF*STQRHIARCSQNEK
Sbjct: 179 YSVIFICLCAMPILVKVFSDLSQ*NFNLLTAGNQFRSCYQTLFF*STQRHIARCSQNEK 3
Score = 139 bits (298), Expect(2) = e-129
Identities = 62/62 (100%), Positives = 62/62 (100%)
Frame = +2 / +2
Query: 2 AFHSDCNGQYVSVWIKKRVSDSSF*TGYLP*VN*NFIDLGH*IL*PI*A*RTDR*KLQST 181
AFHSDCNGQYVSVWIKKRVSDSSF*TGYLP*VN*NFIDLGH*IL*PI*A*RTDR*KLQST
Sbjct: 2 AFHSDCNGQYVSVWIKKRVSDSSF*TGYLP*VN*NFIDLGH*IL*PI*A*RTDR*KLQST 181
Query: 182 QH 187
QH
Sbjct: 182 QH 187
Score = 24.9 bits (48), Expect = 0.002
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -2 / +3
Query: 308 KKSPHCQVRAFF 273
+KSPH VRAFF
Sbjct: 273 EKSPHLTVRAFF 308
Score = 24.9 bits (48), Expect = 0.002
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -3 / +1
Query: 313 SKKKARTVRCGLF 275
++KKART +CGLF
Sbjct: 268 TQKKART*QCGLF 306
Score = 24.9 bits (48), Expect = 0.002
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +3 / -2
Query: 273 EKSPHLTVRAFF 308
+KSPH VRAFF
Sbjct: 308 KKSPHCQVRAFF 273
Score = 24.9 bits (48), Expect = 0.002
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +1 / -3
Query: 268 TQKKART*QCGLF 306
++KKART +CGLF
Sbjct: 313 SKKKARTVRCGLF 275
Score = 22.1 bits (42), Expect = 0.012
Identities = 8/12 (66%), Positives = 9/12 (74%)
Frame = +2 / -1
Query: 272 RKKPAPDSAGFF 307
+KKPA AGFF
Sbjct: 309 KKKPALSGAGFF 274
Score = 22.1 bits (42), Expect = 0.012
Identities = 8/12 (66%), Positives = 9/12 (74%)
Frame = -1 / +2
Query: 309 KKKPALSGAGFF 274
+KKPA AGFF
Sbjct: 272 RKKPAPDSAGFF 307
Score = 18.5 bits (34), Expect = 0.15
Identities = 5/6 (83%), Positives = 5/6 (83%)
Frame = -3 / +3
Query: 598 PAGTPA 581
PAG PA
Sbjct: 579 PAGVPA 596
Score = 18.5 bits (34), Expect = 0.15
Identities = 5/6 (83%), Positives = 5/6 (83%)
Frame = +3 / -3
Query: 579 PAGVPA 596
PAG PA
Sbjct: 598 PAGTPA 581
Score = 18.0 bits (33), Expect = 0.20
Identities = 6/14 (42%), Positives = 6/14 (42%)
Frame = +3 / -3
Query: 243 RCGLTRTGNTEKSP 284
RCGL SP
Sbjct: 289 RCGLFSVFPVRVSP 248
Score = 18.0 bits (33), Expect = 0.20
Identities = 6/14 (42%), Positives = 6/14 (42%)
Frame = -3 / +3
Query: 289 RCGLFSVFPVRVSP 248
RCGL SP
Sbjct: 243 RCGLTRTGNTEKSP 284
Score = 17.6 bits (32), Expect = 0.28
Identities = 5/6 (83%), Positives = 5/6 (83%)
Frame = -3 / -1
Query: 301 ARTVRC 284
ARTV C
Sbjct: 252 ARTVTC 235
Score = 15.3 bits (27), Expect = 1.4
Identities = 5/14 (35%), Positives = 8/14 (56%)
Frame = +1 / +3
Query: 469 NHLVAMIEKTISGQ 510
NH + + ISG+
Sbjct: 333 NHASVEVRRYISGK 374
Score = 15.3 bits (27), Expect = 1.4
Identities = 5/14 (35%), Positives = 8/14 (56%)
Frame = +3 / +1
Query: 333 NHASVEVRRYISGK 374
NH + + ISG+
Sbjct: 469 NHLVAMIEKTISGQ 510
Score = 14.8 bits (26), Expect = 1.9
Identities = 8/20 (40%), Positives = 10/20 (50%)
Frame = +1 / -1
Query: 241 NGAG*RVQETQKKART*QCG 300
+GAG + ART CG
Sbjct: 291 SGAGFFLCFLYASARTVTCG 232
Score = 14.8 bits (26), Expect = 1.9
Identities = 2/6 (33%), Positives = 4/6 (66%)
Frame = +2 / -3
Query: 389 CVLPIF 406
C L ++
Sbjct: 157 CALCLY 140
Score = 14.8 bits (26), Expect = 1.9
Identities = 2/6 (33%), Positives = 4/6 (66%)
Frame = -3 / +2
Query: 157 CALCLY 140
C L ++
Sbjct: 389 CVLPIF 406
Score = 14.3 bits (25), Expect = 2.6
Identities = 6/18 (33%), Positives = 8/18 (44%)
Frame = -2 / +2
Query: 299 PHCQVRAFFCVSCTRQPA 246
P VRA ++PA
Sbjct: 233 PQVTVRADAYRKHRKKPA 286
Score = 13.4 bits (23), Expect = 4.9
Identities = 11/31 (35%), Positives = 11/31 (35%)
Frame = +3 / -3
Query: 57 CLIAASELVTCRE*IKILLT*VTKYFNQYRH 149
CL LVT I I VT RH
Sbjct: 148 CLYWLKYLVT*VNKILIYSRQVTSSEAAIRH 56
Score = 13.4 bits (23), Expect = 4.9
Identities = 11/31 (35%), Positives = 11/31 (35%)
Frame = -3 / +3
Query: 148 CLYWLKYLVT*VNKILIYSRQVTSSEAAIRH 56
CL LVT I I VT RH
Sbjct: 57 CLIAASELVTCRE*IKILLT*VTKYFNQYRH 149
Score = 13.0 bits (22), Expect = 6.7
Identities = 5/14 (35%), Positives = 6/14 (42%)
Frame = -3 / -2
Query: 370 PLMYRRTSTLAWLL 329
PLM WL+
Sbjct: 506 PLMVFSIIATRWLV 465
Score = 13.0 bits (22), Expect = 6.7
Identities = 5/14 (35%), Positives = 6/14 (42%)
Frame = -2 / -3
Query: 506 PLMVFSIIATRWLV 465
PLM WL+
Sbjct: 370 PLMYRRTSTLAWLL 329
Score = 12.5 bits (21), Expect = 9.2
Identities = 3/5 (60%), Positives = 5/5 (100%)
Frame = +2 / -2
Query: 275 KKPAP 289
++PAP
Sbjct: 257 RQPAP 243
Lambda K H
0.318 0.135 0.401
Matrix: BLOSUM62
Number of Hits to DB: 2790
Number of Sequences: 0
Number of extensions: 62
Number of successful extensions: 40
Number of sequences better than 10.0: 1
length of database: 240
effective HSP length: 19
effective length of database: 221
effective search space used: 48620
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)