FGENESH 2.3 Prediction of potential genes in C_elegans genomic DNA
 Time    :   Wed Feb 27 13:43:15 2008
 Seq name: gi|1914348|emb|Z81551.1| Caenorhabditis elegans Cosmid F56A12, complete sequence 
 Length of sequence: 26028 
 Number of predicted genes 4 in +chain 1 in -chain 3
 Number of predicted exons 19 in +chain 4 in -chain 15
 Positions of predicted genes and exons:
   G Str   Feature   Start        End    Score           ORF           Len

   1 -      PolA        29               -0.94
   1 -    1 CDSl       828 -       903    2.72       828 -       902     75
   1 -    2 CDSf       996 -      1201    9.86       998 -      1201    204
   1 -      TSS       1869               -4.49

   2 -      PolA      9879                1.25
   2 -    1 CDSl     10132 -     10275    7.05     10132 -     10275    144
   2 -    2 CDSi     11180 -     11291    3.76     11180 -     11290    111
   2 -    3 CDSi     11786 -     12035    1.01     11788 -     12033    246
   2 -    4 CDSi     12238 -     12404    9.79     12239 -     12403    165
   2 -    5 CDSf     12884 -     12900    0.72     12886 -     12900     15
   2 -      TSS      13142               -4.89

   3 +      TSS      14096               -7.69
   3 +    1 CDSf     14778 -     15104   27.84     14778 -     15104    327
   3 +    2 CDSi     15673 -     15802   20.10     15673 -     15801    129
   3 +    3 CDSi     16175 -     16524   28.83     16177 -     16524    348
   3 +    4 CDSl     16988 -     17212   15.92     16988 -     17212    225
   3 +      PolA     17223                1.25

   4 -      PolA     17420                1.25
   4 -    1 CDSl     17552 -     17630    0.75     17552 -     17629     78
   4 -    2 CDSi     17690 -     17848   22.67     17692 -     17847    156
   4 -    3 CDSi     18221 -     18453   26.88     18223 -     18453    231
   4 -    4 CDSi     18501 -     18637   19.50     18501 -     18635    135
   4 -    5 CDSi     18850 -     19024    8.97     18851 -     19024    174
   4 -    6 CDSi     19073 -     19156    8.63     19073 -     19156     84
   4 -    7 CDSi     19206 -     19472   23.22     19206 -     19472    267
   4 -    8 CDSf     20381 -     20479   21.19     20381 -     20479     99
   4 -      TSS      21231               -5.29

Predicted protein(s):
>FGENESH:   1   2 exon (s)    828  -   1201    93 aa, chain -
MSCRHRSTSTTGCKHQNILYAREKMYVWECQHGNGKKGEKLIVGMGVLELLGVSMRILYA
REKVSAWEICFGFYKFSFQKAENHETCRKIIEN
>FGENESH:   2   5 exon (s)  10132  -  12900   229 aa, chain -
MNLLQSTSIDYHVAHNVWLQMENNLYFLRIHLLSSPIWGVGAAVNTFLIETVDQITIAGV
KRGLSLLNYFLFTYGKPLPIEHIVKGPLSTKIPSMCYWQLCSKIFRKMKTPKSGKTEFLC
VSIFVAQAFFSFKDPEARDKAETLDNDHVAGVVKIVAPITYIYTSPSILLAQTSCLERRT
PVKYIDLFLCFFFLFFFPDPLVLIGTGWHAWAPLTIICSMFSDEKSTNS
>FGENESH:   3   4 exon (s)  14778  -  17212   343 aa, chain +
MSSIPPYFMTDHPPIDTSSYFDCYQQHQLPLQYTFTSSSNSNTSNSSTSPSHISDQFSSS
GGPPYELSSHILTPSSVIPTPSPSVASASISSPTIPAFGCTMSEYSMEQMEAISTSLFQA
RDGDRLVAFFKQLESLYGPNAVDHLRSEAIIVAYTYALYHSNEFETLFHLLSNRHFQQRH
YNDLQDIWHHARYKESQLKRGKELNPVEKYRLRRKFPAPKTIWDGEEIVYSFKDSSRKFL
KQFFRNVSEYPTQEQKREISRATGLKIVQISNWFKNRRQRDKSNNSAKCSPPSSSSSTNG
GSDFLPIITPQSFNLAAAPFNMNMIYGTLRDSQSDNDQFTFNP
>FGENESH:   4   8 exon (s)  17552  -  20479   410 aa, chain -
MNETDDNWTVFTKLYSCQYRASDDSPQFTLWLDGPVTISAAIFSAIGTVYAIGFLRNGHL
NRRMSAALYTLCLMDFMLTMTTVLFLSIEPLSILLFRTNIFYQHQDMILILYGIRNSFAM
SSPMLVCYITYIRYRVVNNPLKFASHYGRSRKSISASKMSTAAQPSSTESAKFTISFPAE
MFYEFHTRSNAGKRGANFRRFFRPFLVPILLVILCFVIHSTSYFEFNLITCFDEVHQTES
KMLQMTQLRGDSYWYFQFKVALTMTTETLGPMLFISTLSLFTEYKMHQNVKERRRLFESQ
KRSRNTLVTEELKDKASKALAVFIVVKFLILRSLPTLIDLYEVLIENSINFGPFMTKVTR
ISDFLVILNSATNTLAYFGKVRFEKWLERRIRCRIVKKEAKEILSTSLTG