BLASTN 2.2.14 [May-07-2006]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Database: LTR_STRUC_8x_na
791 sequences; 6,808,925 total letters
Searching
Query= jgi|Phypa1|75037|fgenesh1_pg.scaffold_51000008
(2511 letters)
Score E
Sequences producing significant alignments: (bits) Value
scaffold_5_1_Scaffolds_seq10928_PT_B1_L1_270_rprt_txt 1356 0.0
>scaffold_5_1_Scaffolds_seq10928_PT_B1_L1_270_rprt_txt
Length = 16463
Score = 1356 bits (684), Expect = 0.0
Identities = 684/684 (100%)
Strand = Plus / Plus
Query: 1088 ctacaatacgaggtacaataggttgggaggatcctgttgaatctctttcagttcatgcat 1147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8914 ctacaatacgaggtacaataggttgggaggatcctgttgaatctctttcagttcatgcat 8973
Query: 1148 atattgctaagagccaacatgaagctttgatggaagaaaagaaacgaggaaattttgatg 1207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8974 atattgctaagagccaacatgaagctttgatggaagaaaagaaacgaggaaattttgatg 9033
Query: 1208 atacgagagaaggaaattcttctaagaggcaaactcgaggagacaaggctcgggaggcag 1267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9034 atacgagagaaggaaattcttctaagaggcaaactcgaggagacaaggctcgggaggcag 9093
Query: 1268 cttcacaagaattgcctctaaaggatacctcaacatcattggaagaaaaaacaagggaga 1327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9094 cttcacaagaattgcctctaaaggatacctcaacatcattggaagaaaaaacaagggaga 9153
Query: 1328 caaatgataagggcaaatcaattgcttataaactactttctgacattgaagtggcaacaa 1387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9154 caaatgataagggcaaatcaattgcttataaactactttctgacattgaagtggcaacaa 9213
Query: 1388 atttgaaaggggtgttggaagaacgtatattaaatgctaaggtggaattcacattgaaag 1447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9214 atttgaaaggggtgttggaagaacgtatattaaatgctaaggtggaattcacattgaaag 9273
Query: 1448 aagttttggaaattgcaaagaaggagtttcatgatgttatcattgacagcattaagcaaa 1507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9274 aagttttggaaattgcaaagaaggagtttcatgatgttatcattgacagcattaagcaaa 9333
Query: 1508 agagaaaattaatggacaaaactggaatgagtcatactattgatgcaagaatatataaag 1567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9334 agagaaaattaatggacaaaactggaatgagtcatactattgatgcaagaatatataaag 9393
Query: 1568 atgaagaagaggttgatattggttacaagcaactaaaaaatgaaaagaataggtataatc 1627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9394 atgaagaagaggttgatattggttacaagcaactaaaaaatgaaaagaataggtataatc 9453
Query: 1628 aacgaatacgttttgaagattatattgataaggaaatggaaaccttgagccattatactc 1687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9454 aacgaatacgttttgaagattatattgataaggaaatggaaaccttgagccattatactc 9513
Query: 1688 gaaagcattggacaagagcaactaatgaggtattggtgaaagtaggagatatagaagaac 1747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9514 gaaagcattggacaagagcaactaatgaggtattggtgaaagtaggagatatagaagaac 9573
Query: 1748 caattgttgttttagttgaccatg 1771
||||||||||||||||||||||||
Sbjct: 9574 caattgttgttttagttgaccatg 9597
Score = 1154 bits (582), Expect = 0.0
Identities = 582/582 (100%)
Strand = Plus / Plus
Query: 1930 ccagattatggaggtacaaaagaggaggtactctctcgagatgaaggtgccattgatgta 1989
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10015 ccagattatggaggtacaaaagaggaggtactctctcgagatgaaggtgccattgatgta 10074
Query: 1990 agttttattggtattttggagaatgaaaatattatgtataagaaagttgatgattttaaa 2049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10075 agttttattggtattttggagaatgaaaatattatgtataagaaagttgatgattttaaa 10134
Query: 2050 agaaaagaaagaaaaaaaatatatcatattgaaggagaattatgcaagttaggtacattg 2109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10135 agaaaagaaagaaaaaaaatatatcatattgaaggagaattatgcaagttaggtacattg 10194
Query: 2110 caagatgatgagaggattttaggtgtttatgaagaaaatgggctggaagattcattggaa 2169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10195 caagatgatgagaggattttaggtgtttatgaagaaaatgggctggaagattcattggaa 10254
Query: 2170 ttgattacatctattcggttagaagataatgataagattgttgagattcattcgaaagaa 2229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10255 ttgattacatctattcggttagaagataatgataagattgttgagattcattcgaaagaa 10314
Query: 2230 gtttataccatacttgaatcttttcaagcaccagaagtcactatagagacaagatataaa 2289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10315 gtttataccatacttgaatcttttcaagcaccagaagtcactatagagacaagatataaa 10374
Query: 2290 atggcagataagaagataaagcctgttgccggaccattaccaaaagattctaaggaacaa 2349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10375 atggcagataagaagataaagcctgttgccggaccattaccaaaagattctaaggaacaa 10434
Query: 2350 atgggagaagaatcaaaagaagcaagtttaagggatccaatgagtattggacatcagttt 2409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10435 atgggagaagaatcaaaagaagcaagtttaagggatccaatgagtattggacatcagttt 10494
Query: 2410 actaaagagacttttgaagaattgaagattgattctgatggttctttattgccggaagaa 2469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10495 actaaagagacttttgaagaattgaagattgattctgatggttctttattgccggaagaa 10554
Query: 2470 attacttacttcaaaaagatgttggctaaacaaggtagatag 2511
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10555 attacttacttcaaaaagatgttggctaaacaaggtagatag 10596
Score = 918 bits (463), Expect = 0.0
Identities = 463/463 (100%)
Strand = Plus / Plus
Query: 336 ggaatatttcaaggtatttacgataccaaagataagagaccatattacattgattacgga 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7931 ggaatatttcaaggtatttacgataccaaagataagagaccatattacattgattacgga 7990
Query: 396 tcgttatggaaattcatgggaggttttttcacatgcattgaaagatgaatatttcttgga 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7991 tcgttatggaaattcatgggaggttttttcacatgcattgaaagatgaatatttcttgga 8050
Query: 456 agatgctgatcacattactaagaagttgtttctggaatggattgaacggcctaataagaa 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8051 agatgctgatcacattactaagaagttgtttctggaatggattgaacggcctaataagaa 8110
Query: 516 tttacaagcaacagagctactaagggaatttgagaggcagtactctcaattattgaaggt 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8111 tttacaagcaacagagctactaagggaatttgagaggcagtactctcaattattgaaggt 8170
Query: 576 agaaaaattgacattggagccgaacaaatttgatctatttcttcaagctgctgatggaga 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8171 agaaaaattgacattggagccgaacaaatttgatctatttcttcaagctgctgatggaga 8230
Query: 636 attgcaagggaaattagaattccttcttgaagacaaagaagaaggtgaaggattgacaac 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8231 attgcaagggaaattagaattccttcttgaagacaaagaagaaggtgaaggattgacaac 8290
Query: 696 aaagtggaagaacattgaagatgcggtggagttgcttacaaaaagagaaaggaggaaaga 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8291 aaagtggaagaacattgaagatgcggtggagttgcttacaaaaagagaaaggaggaaaga 8350
Query: 756 taggagtaatattccgaaaatagtacaagcacccaaagctcca 798
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8351 taggagtaatattccgaaaatagtacaagcacccaaagctcca 8393
Score = 573 bits (289), Expect = e-163
Identities = 289/289 (100%)
Strand = Plus / Plus
Query: 799 aatgtttcaaaacaaggatatgtacaaagatgcatttggtgtgatgatgctttatacact 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8550 aatgtttcaaaacaaggatatgtacaaagatgcatttggtgtgatgatgctttatacact 8609
Query: 859 aggaaagattgcaatgaatttaataatatgatacggcaaggaattatttgctggaaagat 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8610 aggaaagattgcaatgaatttaataatatgatacggcaaggaattatttgctggaaagat 8669
Query: 919 ggaaagatagcattaaaagatagggaggatcttcttctaaccaactttgacaagagagga 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8670 ggaaagatagcattaaaagatagggaggatcttcttctaaccaactttgacaagagagga 8729
Query: 979 atgagagcattggttcaagattacttaaaagagcatgaaacagcagcacgagaaagtaca 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8730 atgagagcattggttcaagattacttaaaagagcatgaaacagcagcacgagaaagtaca 8789
Query: 1039 agttatggtgctagagtagatgatgaccttagtggaagtacggaaacta 1087
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8790 agttatggtgctagagtagatgatgaccttagtggaagtacggaaacta 8838
Score = 315 bits (159), Expect = 2e-85
Identities = 159/159 (100%)
Strand = Plus / Plus
Query: 1771 gctaataacacatggggcgaattatatggagctcgtccagatgtcaaaatttggattggg 1830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9684 gctaataacacatggggcgaattatatggagctcgtccagatgtcaaaatttggattggg 9743
Query: 1831 gatgttgcgacggagcaacatttctttgttcaagatacaacgtcttatccgttgatttta 1890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9744 gatgttgcgacggagcaacatttctttgttcaagatacaacgtcttatccgttgatttta 9803
Query: 1891 gaacaaccttatattatggcaatacggatggaaacaaaa 1929
|||||||||||||||||||||||||||||||||||||||
Sbjct: 9804 gaacaaccttatattatggcaatacggatggaaacaaaa 9842
Score = 230 bits (116), Expect = 7e-60
Identities = 116/116 (100%)
Strand = Plus / Plus
Query: 95 acagtcagtggatacaagatcgtgagtataaagcggtatcgaagattagcagattgggtt 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7360 acagtcagtggatacaagatcgtgagtataaagcggtatcgaagattagcagattgggtt 7419
Query: 155 gttcgggattctttgtaacgtctagagacctaccggctgaggcaaaaaggattttg 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7420 gttcgggattctttgtaacgtctagagacctaccggctgaggcaaaaaggattttg 7475
Score = 186 bits (94), Expect = 1e-46
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 1 atggtgtttaattgggcagcttatgtagcaactcgtattcatgcggaaatgggagccaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6461 atggtgtttaattgggcagcttatgtagcaactcgtattcatgcggaaatgggagccaag 6520
Query: 61 tgcaaaatagagaagtttacagtgttgtcgtatt 94
||||||||||||||||||||||||||||||||||
Sbjct: 6521 tgcaaaatagagaagtttacagtgttgtcgtatt 6554
Score = 182 bits (92), Expect = 2e-45
Identities = 110/116 (94%)
Strand = Plus / Plus
Query: 95 acagtcagtggatacaagatcgtgagtataaagcggtatcgaagattagcagattgggtt 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14136 acagtcagtggatacaagatcgtgagtataaagcggtatcgaagattagcagattgggtt 14195
Query: 155 gttcgggattctttgtaacgtctagagacctaccggctgaggcaaaaaggattttg 210
||||||| |||| ||||| ||||||||||||||| |||| | ||||||||||||||
Sbjct: 14196 gttcggggttctctgtaatgtctagagacctaccagctgggacaaaaaggattttg 14251
Score = 139 bits (70), Expect = 2e-32
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 210 gagaacgaaaataaaaattttgaaggatctttgggaggagtttctggtggaggttcttct 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7717 gagaacgaaaataaaaattttgaaggatctttgggaggagtttctggtggaggttcttct 7776
Query: 270 caaggacaag 279
||||||||||
Sbjct: 7777 caaggacaag 7786
Score = 119 bits (60), Expect = 2e-26
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 278 agcaacagcaaagcaatgatcaagaggaagctttggcaaccaaagcattgcaagcagtgg 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7844 agcaacagcaaagcaatgatcaagaggaagctttggcaaccaaagcattgcaagcagtgg 7903
Database: LTR_STRUC_8x_na
Posted date: Sep 4, 2006 3:29 PM
Number of letters in database: 6,808,925
Number of sequences in database: 791
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 791
Number of Hits to DB: 350,368
Number of extensions: 23312
Number of successful extensions: 1851
Number of sequences better than 1.0e-04: 233
Number of HSP's gapped: 1699
Number of HSP's successfully gapped: 1236
Length of query: 2511
Length of database: 6,808,925
Length adjustment: 17
Effective length of query: 2494
Effective length of database: 6,795,478
Effective search space: 16947922132
Effective search space used: 16947922132
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 15 (30.2 bits)
S2: 24 (48.1 bits)
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Database: LTR_STRUC_8x_na
791 sequences; 6,808,925 total letters
Searching
Query= jgi|Phypa1|96131|fgenesh1_pg.scaffold_296000015
(456 letters)
Score E
Sequences producing significant alignments: (bits) Value
scaffold_5_6_Scaffolds_seq_8392_PT_B8_L9_282_rprt_txt 276 2e-74
>scaffold_5_6_Scaffolds_seq_8392_PT_B8_L9_282_rprt_txt
Length = 8149
Score = 276 bits (139), Expect = 2e-74
Identities = 157/163 (96%)
Strand = Plus / Minus
Query: 1 atgaatatgaaagaccttaatgaaggtacagagattccacagcaaaaagatgaaagtgat 60
||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 1524 atgaatatggaagaccttaatgaaggtacagagattccgcagcaagaagatgaaagtgat 1465
Query: 61 atggataatgaaggtgacgaagacgaactggacaaagacgtaggggatatattcagaatc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1464 atggataatgaaggtgacgaagacgaactggacaaagacgtaggggatatattctgaatc 1405
Query: 121 aaacagcaattgggtaaattggtgcataccggaggatgcacag 163
||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 1404 aaatagcaattggataaattggtgcataccggaggatgcacag 1362
Score = 151 bits (76), Expect = 9e-37
Identities = 100/108 (92%)
Strand = Plus / Minus
Query: 164 tcgtttatattccagcagtcaaaactgatagactgcttgactatcgacgaatctccatac 223
||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||
Sbjct: 6919 tcgtttatattccagcagtaaaaactgatagactgcttgactatcggcggatctccatac 6860
Query: 224 taccttctacagctagacgcccgacgcgttctcgagcaggaaagcacg 271
||||||||| ||| ||| ||||| ||||||||||||||||| ||||||
Sbjct: 6859 taccttctagagccagaggcccggcgcgttctcgagcaggagagcacg 6812
Score = 143 bits (72), Expect = 2e-34
Identities = 96/104 (92%)
Strand = Plus / Minus
Query: 161 cagtcgtttatattccagcagtcaaaactgatagactgcttgactatcgacgaatctcca 220
|||||||||||||| ||||||| |||||||||||||||||||||||||| || |||||||
Sbjct: 120 cagtcgtttatatttcagcagtaaaaactgatagactgcttgactatcggcggatctcca 61
Query: 221 tactaccttctacagctagacgcccgacgcgttctcgagcagga 264
|||||||||||| ||| ||||||||| | |||||||||||||||
Sbjct: 60 tactaccttctagagccagacgcccggctcgttctcgagcagga 17
Score = 60.0 bits (30), Expect = 3e-09
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 312 ggagccaattctagatccaagacggaagattgaagaaattcagagg 357
||||||||||| |||| |||| |||||||||||||||||||||||
Sbjct: 739 ggagccaattccggatctaagatggaagattgaagaaattcagagg 694
Score = 52.0 bits (26), Expect = 6e-07
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 312 ggagccaattctagatccaagacggaagattgaagaaattcagagg 357
|||||||||| |||| |||| |||||||||||||||||||||||
Sbjct: 7543 ggagccaatttcggatctaagatggaagattgaagaaattcagagg 7498
Database: LTR_STRUC_8x_na
Posted date: Sep 4, 2006 3:29 PM
Number of letters in database: 6,808,925
Number of sequences in database: 791
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 791
Number of Hits to DB: 50,062
Number of extensions: 3603
Number of successful extensions: 1243
Number of sequences better than 1.0e-04: 157
Number of HSP's gapped: 985
Number of HSP's successfully gapped: 621
Length of query: 456
Length of database: 6,808,925
Length adjustment: 16
Effective length of query: 440
Effective length of database: 6,796,269
Effective search space: 2990358360
Effective search space used: 2990358360
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
S2: 23 (46.1 bits)